Mercurial > repos > florianbegusch > qiime2_suite
view qiime2/qiime_phylogeny_fasttree.xml @ 10:21c7954105a9 draft
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author | florianbegusch |
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date | Sun, 25 Aug 2019 10:26:27 -0400 |
parents | f190567fe3f6 |
children | a0a8d77a991c |
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<?xml version="1.0" ?> <tool id="qiime_phylogeny_fasttree" name="qiime phylogeny fasttree" version="2019.7"> <description> - Construct a phylogenetic tree with FastTree.</description> <requirements> <requirement type="package" version="2019.7">qiime2</requirement> </requirements> <command><![CDATA[ qiime phylogeny fasttree --i-alignment=$ialignment #set $pnthreads = '${GALAXY_SLOTS:-4}' #if str($pnthreads): --p-n-threads="$pnthreads" #end if --o-tree=otree ; cp otree.qza $otree ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-alignment: ARTIFACT FeatureData[AlignedSequence] Aligned sequences to be used for phylogenetic reconstruction. [required]" name="ialignment" optional="False" type="data"/> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: tree.qza" name="otree"/> </outputs> <help><![CDATA[ Construct a phylogenetic tree with FastTree. ############################################ Construct a phylogenetic tree with FastTree. Parameters ---------- alignment : FeatureData[AlignedSequence] Aligned sequences to be used for phylogenetic reconstruction. Returns ------- tree : Phylogeny[Unrooted] The resulting phylogenetic tree. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>