Mercurial > repos > florianbegusch > qiime2_suite
view qiime2/qiime_sample-classifier_summarize.xml @ 15:276ec629f09a draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:56:05 +0000 |
parents | a0a8d77a991c |
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<?xml version="1.0" ?> <tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize" version="2020.8"> <description>Summarize parameter and feature extraction information for a trained estimator.</description> <requirements> <requirement type="package" version="2020.8">qiime2</requirement> </requirements> <command><![CDATA[ qiime sample-classifier summarize --i-sample-estimator=$isampleestimator --o-visualization=ovisualization #if str($examples) != 'None': --examples=$examples #end if ; cp otesttable.qza $otesttable ; qiime tools export ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' && cp -r out/* '$ovisualization.files_path' && mv '$ovisualization.files_path/index.html' '$ovisualization' ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data" /> <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> </inputs> <outputs> <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" /> </outputs> <help><![CDATA[ Summarize parameter and feature extraction information for a trained estimator. ############################################################### Summarize parameter and feature extraction information for a trained estimator. Parameters ---------- sample_estimator : SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. Returns ------- visualization : Visualization ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>