Mercurial > repos > florianbegusch > qiime2_suite
view qiime2-2020.8/qiime_diversity-lib_pielou-evenness.xml @ 22:292c84bd5ab6 draft
Uploaded
author | florianbegusch |
---|---|
date | Fri, 04 Sep 2020 12:55:05 +0000 |
parents | d93d8888f0b0 |
children |
line wrap: on
line source
<?xml version="1.0" ?> <tool id="qiime_diversity-lib_pielou-evenness" name="qiime diversity-lib pielou-evenness" version="2020.8"> <description>Pielou\'s Evenness</description> <requirements> <requirement type="package" version="2020.8">qiime2</requirement> </requirements> <command><![CDATA[ qiime diversity-lib pielou-evenness --i-table=$itable #if $pdropundefinedsamples: --p-drop-undefined-samples #end if --o-vector=ovector #if str($examples) != 'None': --examples=$examples #end if ; cp ovector.qza $ovector ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table containing the samples for which Pielou\'s evenness should be computed. [required]" name="itable" optional="False" type="data" /> <param label="--p-drop-undefined-samples: --p-drop-undefined-samples: / --p-no-drop-undefined-samples Samples with fewer than two observed features produce undefined (NaN) values. If true, these samples are dropped from the output vector. [default: False]" name="pdropundefinedsamples" selected="False" type="boolean" /> <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" /> </outputs> <help><![CDATA[ Pielou\'s Evenness ############################################################### Compute Pielou's Evenness for each sample in a feature table Parameters ---------- table : FeatureTable[Frequency | RelativeFrequency] The feature table containing the samples for which Pielou's evenness should be computed. drop_undefined_samples : Bool, optional Samples with fewer than two observed features produce undefined (NaN) values. If true, these samples are dropped from the output vector. Returns ------- vector : SampleData[AlphaDiversity] Vector containing per-sample values for Pielou's Evenness. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>