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view qiime2-2020.8/qiime_feature-table_subsample.xml @ 22:292c84bd5ab6 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 12:55:05 +0000 |
parents | d93d8888f0b0 |
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<?xml version="1.0" ?> <tool id="qiime_feature-table_subsample" name="qiime feature-table subsample" version="2020.8"> <description>Subsample table</description> <requirements> <requirement type="package" version="2020.8">qiime2</requirement> </requirements> <command><![CDATA[ qiime feature-table subsample --i-table=$itable --p-subsampling-depth=$psubsamplingdepth --p-axis=$paxis --o-sampled-table=osampledtable #if str($examples) != 'None': --examples=$examples #end if ; cp osampledtable.qza $osampledtable ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be sampled. [required]" name="itable" optional="False" type="data" /> <param label="--p-subsampling-depth: INTEGER Range(1, None) The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. [required]" name="psubsamplingdepth" optional="False" type="text" /> <param label="--p-axis: " name="paxis" optional="False" type="select"> <option value="sample">sample</option> <option value="feature">feature</option> </param> <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: sampledtable.qza" name="osampledtable" /> </outputs> <help><![CDATA[ Subsample table ############################################################### Randomly pick samples or features, without replacement, from the table. Parameters ---------- table : FeatureTable[Frequency] The feature table to be sampled. subsampling_depth : Int % Range(1, None) The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. axis : Str % Choices('sample', 'feature') The axis to sample over. If "sample" then samples will be randomly selected to be retained. If "feature" then a random set of features will be selected to be retained. Returns ------- sampled_table : FeatureTable[Frequency] The resulting subsampled feature table. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>