[up]
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drwxr-xr-x |
merge_feature_table_and_taxonomy.xml
|
1231 |
-rw-r--r-- |
qiime_alignment_mafft.xml
|
1738 |
-rw-r--r-- |
qiime_alignment_mask.xml
|
3357 |
-rw-r--r-- |
qiime_citation.xml
|
3603 |
-rw-r--r-- |
qiime_composition_add-pseudocount.xml
|
1600 |
-rw-r--r-- |
qiime_composition_ancom.xml
|
3828 |
-rw-r--r-- |
qiime_cutadapt_demux-paired.xml
|
4390 |
-rw-r--r-- |
qiime_cutadapt_demux-single.xml
|
3569 |
-rw-r--r-- |
qiime_cutadapt_trim-paired.xml
|
10874 |
-rw-r--r-- |
qiime_cutadapt_trim-single.xml
|
7628 |
-rw-r--r-- |
qiime_dada2_denoise-paired.xml
|
9835 |
-rw-r--r-- |
qiime_dada2_denoise-pyro.xml
|
8418 |
-rw-r--r-- |
qiime_dada2_denoise-single.xml
|
7668 |
-rw-r--r-- |
qiime_deblur_denoise-16S.xml
|
5612 |
-rw-r--r-- |
qiime_deblur_denoise-other.xml
|
6023 |
-rw-r--r-- |
qiime_deblur_visualize-stats.xml
|
1359 |
-rw-r--r-- |
qiime_demux_emp-paired.xml
|
4308 |
-rw-r--r-- |
qiime_demux_emp-single.xml
|
4333 |
-rw-r--r-- |
qiime_demux_subsample-paired.xml
|
1999 |
-rw-r--r-- |
qiime_demux_subsample-single.xml
|
2036 |
-rw-r--r-- |
qiime_demux_summarize.xml
|
2337 |
-rw-r--r-- |
qiime_diversity_adonis.xml
|
4280 |
-rw-r--r-- |
qiime_diversity_alpha-correlation.xml
|
2711 |
-rw-r--r-- |
qiime_diversity_alpha-group-significance.xml
|
2660 |
-rw-r--r-- |
qiime_diversity_alpha-phylogenetic.xml
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2361 |
-rw-r--r-- |
qiime_diversity_alpha-rarefaction.xml
|
6275 |
-rw-r--r-- |
qiime_diversity_alpha.xml
|
3320 |
-rw-r--r-- |
qiime_diversity_beta-correlation.xml
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5545 |
-rw-r--r-- |
qiime_diversity_beta-group-significance.xml
|
3930 |
-rw-r--r-- |
qiime_diversity_beta-phylogenetic-alt.xml
|
5806 |
-rw-r--r-- |
qiime_diversity_beta-phylogenetic.xml
|
5011 |
-rw-r--r-- |
qiime_diversity_beta-rarefaction.xml
|
8397 |
-rw-r--r-- |
qiime_diversity_beta.xml
|
3409 |
-rw-r--r-- |
qiime_diversity_bioenv.xml
|
2387 |
-rw-r--r-- |
qiime_diversity_core-metrics-phylogenetic.xml
|
9452 |
-rw-r--r-- |
qiime_diversity_core-metrics.xml
|
5717 |
-rw-r--r-- |
qiime_diversity_filter-distance-matrix.xml
|
3797 |
-rw-r--r-- |
qiime_diversity_mantel.xml
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4621 |
-rw-r--r-- |
qiime_diversity_pcoa-biplot.xml
|
1731 |
-rw-r--r-- |
qiime_diversity_pcoa.xml
|
2800 |
-rw-r--r-- |
qiime_diversity_procrustes-analysis.xml
|
2246 |
-rw-r--r-- |
qiime_emperor_biplot.xml
|
4123 |
-rw-r--r-- |
qiime_emperor_plot.xml
|
3628 |
-rw-r--r-- |
qiime_emperor_procrustes-plot.xml
|
3936 |
-rw-r--r-- |
qiime_feature-classifier_classify-consensus-blast.xml
|
6679 |
-rw-r--r-- |
qiime_feature-classifier_classify-consensus-vsearch.xml
|
6059 |
-rw-r--r-- |
qiime_feature-classifier_classify-sklearn.xml
|
3309 |
-rw-r--r-- |
qiime_feature-classifier_extract-reads.xml
|
3856 |
-rw-r--r-- |
qiime_feature-classifier_fit-classifier-naive-bayes.xml
|
8311 |
-rw-r--r-- |
qiime_feature-classifier_fit-classifier-sklearn.xml
|
2666 |
-rw-r--r-- |
qiime_feature-table_core-features.xml
|
2663 |
-rw-r--r-- |
qiime_feature-table_filter-features.xml
|
5626 |
-rw-r--r-- |
qiime_feature-table_filter-samples.xml
|
5758 |
-rw-r--r-- |
qiime_feature-table_filter-seqs.xml
|
4139 |
-rw-r--r-- |
qiime_feature-table_group.xml
|
3463 |
-rw-r--r-- |
qiime_feature-table_heatmap.xml
|
16411 |
-rw-r--r-- |
qiime_feature-table_merge-seqs.xml
|
1853 |
-rw-r--r-- |
qiime_feature-table_merge-taxa.xml
|
1870 |
-rw-r--r-- |
qiime_feature-table_merge.xml
|
2205 |
-rw-r--r-- |
qiime_feature-table_presence-absence.xml
|
1443 |
-rw-r--r-- |
qiime_feature-table_rarefy.xml
|
2411 |
-rw-r--r-- |
qiime_feature-table_relative-frequency.xml
|
1472 |
-rw-r--r-- |
qiime_feature-table_subsample.xml
|
2158 |
-rw-r--r-- |
qiime_feature-table_summarize.xml
|
2056 |
-rw-r--r-- |
qiime_feature-table_tabulate-seqs.xml
|
1467 |
-rw-r--r-- |
qiime_feature-table_transpose.xml
|
1300 |
-rw-r--r-- |
qiime_fragment-insertion_classify-otus-experimental.xml
|
3165 |
-rw-r--r-- |
qiime_fragment-insertion_filter-features.xml
|
3061 |
-rw-r--r-- |
qiime_fragment-insertion_sepp.xml
|
5202 |
-rw-r--r-- |
qiime_gneiss_add-pseudocount.xml
|
1730 |
-rw-r--r-- |
qiime_gneiss_assign-ids.xml
|
2086 |
-rw-r--r-- |
qiime_gneiss_balance-taxonomy.xml
|
5004 |
-rw-r--r-- |
qiime_gneiss_correlation-clustering.xml
|
2054 |
-rw-r--r-- |
qiime_gneiss_dendrogram-heatmap.xml
|
8564 |
-rw-r--r-- |
qiime_gneiss_gradient-clustering.xml
|
3304 |
-rw-r--r-- |
qiime_gneiss_ilr-hierarchical.xml
|
2701 |
-rw-r--r-- |
qiime_gneiss_ilr-phylogenetic.xml
|
3150 |
-rw-r--r-- |
qiime_gneiss_ilr-transform.xml
|
2326 |
-rw-r--r-- |
qiime_gneiss_lme-regression.xml
|
3682 |
-rw-r--r-- |
qiime_gneiss_ols-regression.xml
|
3732 |
-rw-r--r-- |
qiime_longitudinal_anova.xml
|
3954 |
-rw-r--r-- |
qiime_longitudinal_feature-volatility.xml
|
8393 |
-rw-r--r-- |
qiime_longitudinal_first-differences.xml
|
5786 |
-rw-r--r-- |
qiime_longitudinal_first-distances.xml
|
5403 |
-rw-r--r-- |
qiime_longitudinal_linear-mixed-effects.xml
|
8836 |
-rw-r--r-- |
qiime_longitudinal_maturity-index.xml
|
13405 |
-rw-r--r-- |
qiime_longitudinal_nmit.xml
|
3545 |
-rw-r--r-- |
qiime_longitudinal_pairwise-differences.xml
|
7520 |
-rw-r--r-- |
qiime_longitudinal_pairwise-distances.xml
|
7037 |
-rw-r--r-- |
qiime_longitudinal_plot-feature-volatility.xml
|
4726 |
-rw-r--r-- |
qiime_longitudinal_volatility.xml
|
5092 |
-rw-r--r-- |
qiime_metadata_distance-matrix.xml
|
2290 |
-rw-r--r-- |
qiime_metadata_tabulate.xml
|
2268 |
-rw-r--r-- |
qiime_phylogeny_align-to-tree-mafft-fasttree.xml
|
4956 |
-rw-r--r-- |
qiime_phylogeny_fasttree.xml
|
1355 |
-rw-r--r-- |
qiime_phylogeny_filter-table.xml
|
1748 |
-rw-r--r-- |
qiime_phylogeny_iqtree-ultrafast-bootstrap.xml
|
27415 |
-rw-r--r-- |
qiime_phylogeny_iqtree.xml
|
24526 |
-rw-r--r-- |
qiime_phylogeny_midpoint-root.xml
|
1200 |
-rw-r--r-- |
qiime_phylogeny_raxml-rapid-bootstrap.xml
|
4227 |
-rw-r--r-- |
qiime_phylogeny_raxml.xml
|
3585 |
-rw-r--r-- |
qiime_quality-control_evaluate-composition.xml
|
9078 |
-rw-r--r-- |
qiime_quality-control_evaluate-seqs.xml
|
2476 |
-rw-r--r-- |
qiime_quality-control_evaluate-taxonomy.xml
|
6324 |
-rw-r--r-- |
qiime_quality-control_exclude-seqs.xml
|
4660 |
-rw-r--r-- |
qiime_quality-filter_q-score-joined.xml
|
3827 |
-rw-r--r-- |
qiime_quality-filter_q-score.xml
|
3824 |
-rw-r--r-- |
qiime_sample-classifier_classify-samples-from-dist.xml
|
5297 |
-rw-r--r-- |
qiime_sample-classifier_classify-samples-ncv.xml
|
6568 |
-rw-r--r-- |
qiime_sample-classifier_classify-samples.xml
|
11596 |
-rw-r--r-- |
qiime_sample-classifier_confusion-matrix.xml
|
4945 |
-rw-r--r-- |
qiime_sample-classifier_fit-classifier.xml
|
7423 |
-rw-r--r-- |
qiime_sample-classifier_fit-regressor.xml
|
7525 |
-rw-r--r-- |
qiime_sample-classifier_heatmap.xml
|
17820 |
-rw-r--r-- |
qiime_sample-classifier_maturity-index.xml
|
9122 |
-rw-r--r-- |
qiime_sample-classifier_metatable.xml
|
4491 |
-rw-r--r-- |
qiime_sample-classifier_predict-classification.xml
|
2198 |
-rw-r--r-- |
qiime_sample-classifier_predict-regression.xml
|
2176 |
-rw-r--r-- |
qiime_sample-classifier_regress-samples-ncv.xml
|
6944 |
-rw-r--r-- |
qiime_sample-classifier_regress-samples.xml
|
9976 |
-rw-r--r-- |
qiime_sample-classifier_scatterplot.xml
|
2907 |
-rw-r--r-- |
qiime_sample-classifier_split-table.xml
|
4792 |
-rw-r--r-- |
qiime_sample-classifier_summarize.xml
|
1690 |
-rw-r--r-- |
qiime_taxa_barplot.xml
|
3033 |
-rw-r--r-- |
qiime_taxa_collapse.xml
|
2617 |
-rw-r--r-- |
qiime_taxa_filter-seqs.xml
|
5353 |
-rw-r--r-- |
qiime_taxa_filter-table.xml
|
5391 |
-rw-r--r-- |
qiime_tools_export.xml
|
1002 |
-rw-r--r-- |
qiime_tools_export_collection.xml
|
943 |
-rw-r--r-- |
qiime_tools_export_paired_collection.xml
|
962 |
-rw-r--r-- |
qiime_tools_import.xml
|
12051 |
-rw-r--r-- |
qiime_vsearch_cluster-features-closed-reference.xml
|
5332 |
-rw-r--r-- |
qiime_vsearch_cluster-features-de-novo.xml
|
3379 |
-rw-r--r-- |
qiime_vsearch_cluster-features-open-reference.xml
|
5362 |
-rw-r--r-- |
qiime_vsearch_dereplicate-sequences.xml
|
2659 |
-rw-r--r-- |
qiime_vsearch_join-pairs.xml
|
6513 |
-rw-r--r-- |
qiime_vsearch_uchime-denovo.xml
|
4277 |
-rw-r--r-- |
qiime_vsearch_uchime-ref.xml
|
4882 |
-rw-r--r-- |