<?xml version="1.0" ?>
<tool id="qiime_gneiss_add-pseudocount" name="qiime gneiss add-pseudocount" version="2019.4">
	<description> - Add pseudocount to table</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command>
	<![CDATA[
	qiime gneiss add-pseudocount --i-table=$itable

	#if $ppseudocount:
	 --p-pseudocount=$ppseudocount
	#end if

	#if str($cmdconfig) != 'None':
	 --cmd-config=$cmdconfig
	#end if
	 --o-composition-table=ocompositiontable;

 cp ocompositiontable.qza $ocompositiontable
	]]>
	</command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency] The feature table to which pseudocounts should be added.  [required]" name="itable" optional="False" type="data"/>
		<param label="--p-pseudocount: The value to add to all counts in the feature table.  [default: 1]" name="ppseudocount" optional="True" type="integer" value="1"/>
		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: composition-table.qza" name="ocompositiontable"/>
	</outputs>
	<help>
		<![CDATA[
Add pseudocount to table
-------------------------

Increment all counts in table by pseudocount.

Parameters
----------
table : FeatureTable[Frequency]
    The feature table to which pseudocounts should be added.
pseudocount : Int, optional
    The value to add to all counts in the feature table.

Returns
-------
composition_table : FeatureTable[Composition]
    The resulting feature table.
		]]>
	</help>
<macros>
	<import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation" />
</tool>