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author | florianbegusch |
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date | Thu, 03 Sep 2020 10:51:34 +0000 |
parents | a0a8d77a991c |
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<?xml version="1.0" ?> <tool id="qiime_diversity-lib_observed-features" name="qiime diversity-lib observed-features" version="2020.8"> <description>Observed Features</description> <requirements> <requirement type="package" version="2020.8">qiime2</requirement> </requirements> <command><![CDATA[ qiime diversity-lib observed-features #if $itable: --i-table #end if --o-vector=ovector #if str($examples) != 'None': --examples=$examples #end if ; cp ovector.qza $ovector ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency | PresenceAbsence] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence. [required]" name="itable" selected="False" type="boolean" /> <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" /> </outputs> <help><![CDATA[ Observed Features ############################################################### Compute the number of observed features for each sample in a feature table Parameters ---------- table : FeatureTable[Frequency | RelativeFrequency | PresenceAbsence] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence. Returns ------- vector : SampleData[AlphaDiversity] Vector containing per-sample counts of observed features. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>