Mercurial > repos > florianbegusch > qiime2_suite
view qiime2/qiime_feature-table_presence-absence.xml @ 3:558645416841 draft
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author | florianbegusch |
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date | Sun, 21 Jul 2019 02:21:34 -0400 |
parents | 370e0b6e9826 |
children | f190567fe3f6 |
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<?xml version="1.0" ?> <tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" version="2019.4"> <description> - Convert to presence/absence</description> <requirements> <requirement type="package" version="2019.4">qiime2</requirement> </requirements> <command><![CDATA[ qiime feature-table presence-absence --i-table=$itable --o-presence-absence-table=opresenceabsencetable ; cp opresenceabsencetable.qza $opresenceabsencetable ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. [required]" name="itable" optional="False" type="data"/> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: presenceabsencetable.qza" name="opresenceabsencetable"/> </outputs> <help><![CDATA[ Convert to presence/absence ########################### Convert frequencies to binary values indicating presence or absence of a feature in a sample. Parameters ---------- table : FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. Returns ------- presence_absence_table : FeatureTable[PresenceAbsence] The resulting presence/absence feature table. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>