Mercurial > repos > florianbegusch > qiime2_suite
view qiime2/qiime_diversity_pcoa-biplot.xml @ 7:85b520815e85 draft
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author | florianbegusch |
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date | Tue, 13 Aug 2019 07:53:59 -0400 |
parents | 370e0b6e9826 |
children | f190567fe3f6 |
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<?xml version="1.0" ?> <tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot" version="2019.4"> <description> - Principal Coordinate Analysis Biplot</description> <requirements> <requirement type="package" version="2019.4">qiime2</requirement> </requirements> <command><![CDATA[ qiime diversity pcoa-biplot --i-pcoa=$ipcoa --i-features=$ifeatures --o-biplot=obiplot ; cp obiplot.qza $obiplot ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data"/> <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data"/> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot"/> </outputs> <help><![CDATA[ Principal Coordinate Analysis Biplot #################################### Project features into a principal coordinates matrix. The features used should be the features used to compute the distance matrix. It is recommended that these variables be normalized in cases of dimensionally heterogeneous physical variables. Parameters ---------- pcoa : PCoAResults The PCoA where the features will be projected onto. features : FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix Returns ------- biplot : PCoAResults % Properties('biplot') The resulting PCoA matrix. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>