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[up]
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drwxr-xr-x |
 merge_feature_table_and_taxonomy.xml
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1231 |
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qiime_alignment_mafft-add.xml
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2834 |
-rwxr-xr-x |
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qiime_alignment_mafft.xml
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2373 |
-rwxr-xr-x |
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qiime_alignment_mask.xml
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3531 |
-rwxr-xr-x |
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qiime_citation.xml
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3603 |
-rwxr-xr-x |
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qiime_composition_add-pseudocount.xml
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1825 |
-rwxr-xr-x |
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qiime_composition_ancom.xml
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4789 |
-rwxr-xr-x |
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qiime_cutadapt_demux-paired.xml
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8189 |
-rwxr-xr-x |
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qiime_cutadapt_demux-single.xml
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5388 |
-rwxr-xr-x |
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qiime_cutadapt_trim-paired.xml
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12238 |
-rwxr-xr-x |
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qiime_cutadapt_trim-single.xml
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8372 |
-rwxr-xr-x |
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qiime_dada2_denoise-paired.xml
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11128 |
-rwxr-xr-x |
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qiime_dada2_denoise-pyro.xml
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9122 |
-rwxr-xr-x |
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qiime_dada2_denoise-single.xml
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8672 |
-rwxr-xr-x |
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qiime_deblur_denoise-16S.xml
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5656 |
-rwxr-xr-x |
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qiime_deblur_denoise-other.xml
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6060 |
-rwxr-xr-x |
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qiime_deblur_visualize-stats.xml
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1609 |
-rwxr-xr-x |
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qiime_demux_emp-paired.xml
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5424 |
-rwxr-xr-x |
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qiime_demux_emp-single.xml
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5460 |
-rwxr-xr-x |
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qiime_demux_filter-samples.xml
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4999 |
-rwxr-xr-x |
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qiime_demux_subsample-paired.xml
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2178 |
-rwxr-xr-x |
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qiime_demux_subsample-single.xml
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2215 |
-rwxr-xr-x |
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qiime_demux_summarize.xml
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3074 |
-rwxr-xr-x |
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qiime_diversity-lib_alpha-passthrough.xml
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3525 |
-rwxr-xr-x |
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qiime_diversity-lib_beta-passthrough.xml
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4286 |
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qiime_diversity-lib_beta-phylogenetic-passthrough.xml
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5875 |
-rwxr-xr-x |
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qiime_diversity-lib_bray-curtis.xml
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2440 |
-rwxr-xr-x |
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qiime_diversity-lib_faith-pd.xml
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2513 |
-rwxr-xr-x |
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qiime_diversity-lib_jaccard.xml
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2381 |
-rwxr-xr-x |
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qiime_diversity-lib_observed-features.xml
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1796 |
-rwxr-xr-x |
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qiime_diversity-lib_pielou-evenness.xml
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2163 |
-rwxr-xr-x |
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qiime_diversity-lib_shannon-entropy.xml
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2152 |
-rwxr-xr-x |
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qiime_diversity-lib_unweighted-unifrac.xml
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3747 |
-rwxr-xr-x |
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qiime_diversity-lib_weighted-unifrac.xml
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3692 |
-rwxr-xr-x |
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qiime_diversity_adonis.xml
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4908 |
-rwxr-xr-x |
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qiime_diversity_alpha-correlation.xml
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3605 |
-rwxr-xr-x |
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qiime_diversity_alpha-group-significance.xml
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2768 |
-rwxr-xr-x |
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qiime_diversity_alpha-phylogenetic.xml
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2668 |
-rwxr-xr-x |
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qiime_diversity_alpha-rarefaction.xml
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6644 |
-rwxr-xr-x |
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qiime_diversity_alpha.xml
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3696 |
-rwxr-xr-x |
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qiime_diversity_beta-correlation.xml
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7388 |
-rwxr-xr-x |
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qiime_diversity_beta-group-significance.xml
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5240 |
-rwxr-xr-x |
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qiime_diversity_beta-phylogenetic.xml
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5871 |
-rwxr-xr-x |
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qiime_diversity_beta-rarefaction.xml
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8912 |
-rwxr-xr-x |
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qiime_diversity_beta.xml
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4324 |
-rwxr-xr-x |
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qiime_diversity_bioenv.xml
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2923 |
-rwxr-xr-x |
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qiime_diversity_core-metrics-phylogenetic.xml
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9975 |
-rwxr-xr-x |
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qiime_diversity_core-metrics.xml
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6866 |
-rwxr-xr-x |
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qiime_diversity_filter-distance-matrix.xml
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4686 |
-rwxr-xr-x |
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qiime_diversity_mantel.xml
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4904 |
-rwxr-xr-x |
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qiime_diversity_pcoa-biplot.xml
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1972 |
-rwxr-xr-x |
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qiime_diversity_pcoa.xml
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3036 |
-rwxr-xr-x |
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qiime_diversity_procrustes-analysis.xml
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2429 |
-rwxr-xr-x |
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qiime_emperor_biplot.xml
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5775 |
-rwxr-xr-x |
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qiime_emperor_plot.xml
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4181 |
-rwxr-xr-x |
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qiime_emperor_procrustes-plot.xml
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4722 |
-rwxr-xr-x |
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qiime_feature-classifier_classify-consensus-blast.xml
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6208 |
-rwxr-xr-x |
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qiime_feature-classifier_classify-consensus-vsearch.xml
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11119 |
-rwxr-xr-x |
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qiime_feature-classifier_classify-hybrid-vsearch-sklearn.xml
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11415 |
-rwxr-xr-x |
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qiime_feature-classifier_classify-sklearn.xml
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3971 |
-rwxr-xr-x |
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qiime_feature-classifier_extract-reads.xml
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6312 |
-rwxr-xr-x |
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qiime_feature-classifier_fit-classifier-naive-bayes.xml
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8941 |
-rwxr-xr-x |
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qiime_feature-classifier_fit-classifier-sklearn.xml
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2207 |
-rwxr-xr-x |
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qiime_feature-table_core-features.xml
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3723 |
-rwxr-xr-x |
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qiime_feature-table_filter-features.xml
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6439 |
-rwxr-xr-x |
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qiime_feature-table_filter-samples.xml
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6603 |
-rwxr-xr-x |
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qiime_feature-table_filter-seqs.xml
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5583 |
-rwxr-xr-x |
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qiime_feature-table_group.xml
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4474 |
-rwxr-xr-x |
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qiime_feature-table_heatmap.xml
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20843 |
-rwxr-xr-x |
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qiime_feature-table_merge-seqs.xml
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2173 |
-rwxr-xr-x |
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qiime_feature-table_merge-taxa.xml
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2189 |
-rwxr-xr-x |
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qiime_feature-table_merge.xml
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2557 |
-rwxr-xr-x |
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qiime_feature-table_presence-absence.xml
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1829 |
-rwxr-xr-x |
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qiime_feature-table_rarefy.xml
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2681 |
-rwxr-xr-x |
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qiime_feature-table_relative-frequency.xml
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1714 |
-rwxr-xr-x |
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qiime_feature-table_rename-ids.xml
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4771 |
-rwxr-xr-x |
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qiime_feature-table_subsample.xml
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2409 |
-rwxr-xr-x |
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qiime_feature-table_summarize.xml
|
2564 |
-rwxr-xr-x |
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qiime_feature-table_tabulate-seqs.xml
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2435 |
-rwxr-xr-x |
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qiime_feature-table_transpose.xml
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1547 |
-rwxr-xr-x |
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qiime_fragment-insertion_classify-otus-experimental.xml
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2785 |
-rwxr-xr-x |
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qiime_fragment-insertion_filter-features.xml
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3269 |
-rwxr-xr-x |
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qiime_fragment-insertion_sepp.xml
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4156 |
-rwxr-xr-x |
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qiime_gneiss_assign-ids.xml
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2227 |
-rwxr-xr-x |
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qiime_gneiss_correlation-clustering.xml
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2252 |
-rwxr-xr-x |
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qiime_gneiss_dendrogram-heatmap.xml
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9912 |
-rwxr-xr-x |
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qiime_gneiss_gradient-clustering.xml
|
4195 |
-rwxr-xr-x |
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qiime_gneiss_ilr-hierarchical.xml
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2887 |
-rwxr-xr-x |
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qiime_gneiss_ilr-phylogenetic.xml
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3317 |
-rwxr-xr-x |
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qiime_longitudinal_anova.xml
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4384 |
-rwxr-xr-x |
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qiime_longitudinal_feature-volatility.xml
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11276 |
-rwxr-xr-x |
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qiime_longitudinal_first-differences.xml
|
7783 |
-rwxr-xr-x |
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qiime_longitudinal_first-distances.xml
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7402 |
-rwxr-xr-x |
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qiime_longitudinal_linear-mixed-effects.xml
|
11777 |
-rwxr-xr-x |
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qiime_longitudinal_maturity-index.xml
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14815 |
-rwxr-xr-x |
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qiime_longitudinal_nmit.xml
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4831 |
-rwxr-xr-x |
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qiime_longitudinal_pairwise-differences.xml
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10406 |
-rwxr-xr-x |
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qiime_longitudinal_pairwise-distances.xml
|
10196 |
-rwxr-xr-x |
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qiime_longitudinal_plot-feature-volatility.xml
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10117 |
-rwxr-xr-x |
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qiime_longitudinal_volatility.xml
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8712 |
-rwxr-xr-x |
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qiime_phylogeny_align-to-tree-mafft-fasttree.xml
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5944 |
-rwxr-xr-x |
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qiime_phylogeny_align-to-tree-mafft-iqtree.xml
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24575 |
-rwxr-xr-x |
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qiime_phylogeny_align-to-tree-mafft-raxml.xml
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7947 |
-rwxr-xr-x |
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qiime_phylogeny_fasttree.xml
|
2201 |
-rwxr-xr-x |
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qiime_phylogeny_filter-table.xml
|
1969 |
-rwxr-xr-x |
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qiime_phylogeny_iqtree-ultrafast-bootstrap.xml
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28701 |
-rwxr-xr-x |
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qiime_phylogeny_iqtree.xml
|
26172 |
-rwxr-xr-x |
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qiime_phylogeny_midpoint-root.xml
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1429 |
-rwxr-xr-x |
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qiime_phylogeny_raxml-rapid-bootstrap.xml
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4548 |
-rwxr-xr-x |
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qiime_phylogeny_raxml.xml
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3933 |
-rwxr-xr-x |
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qiime_phylogeny_robinson-foulds.xml
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3065 |
-rwxr-xr-x |
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qiime_quality-control_bowtie2-build.xml
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1561 |
-rwxr-xr-x |
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qiime_quality-control_evaluate-composition.xml
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10344 |
-rwxr-xr-x |
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qiime_quality-control_evaluate-seqs.xml
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2919 |
-rwxr-xr-x |
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qiime_quality-control_evaluate-taxonomy.xml
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7044 |
-rwxr-xr-x |
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qiime_quality-control_exclude-seqs.xml
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5271 |
-rwxr-xr-x |
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qiime_quality-control_filter-reads.xml
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4713 |
-rwxr-xr-x |
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qiime_quality-filter_q-score.xml
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4033 |
-rwxr-xr-x |
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qiime_sample-classifier_classify-samples-from-dist.xml
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6408 |
-rwxr-xr-x |
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qiime_sample-classifier_classify-samples-ncv.xml
|
7766 |
-rwxr-xr-x |
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qiime_sample-classifier_classify-samples.xml
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12843 |
-rwxr-xr-x |
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qiime_sample-classifier_confusion-matrix.xml
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7517 |
-rwxr-xr-x |
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qiime_sample-classifier_fit-classifier.xml
|
8417 |
-rwxr-xr-x |
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qiime_sample-classifier_fit-regressor.xml
|
8527 |
-rwxr-xr-x |
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qiime_sample-classifier_heatmap.xml
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22539 |
-rwxr-xr-x |
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qiime_sample-classifier_metatable.xml
|
5209 |
-rwxr-xr-x |
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qiime_sample-classifier_predict-classification.xml
|
2648 |
-rwxr-xr-x |
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qiime_sample-classifier_predict-regression.xml
|
2386 |
-rwxr-xr-x |
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qiime_sample-classifier_regress-samples-ncv.xml
|
8117 |
-rwxr-xr-x |
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qiime_sample-classifier_regress-samples.xml
|
10979 |
-rwxr-xr-x |
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qiime_sample-classifier_scatterplot.xml
|
3858 |
-rwxr-xr-x |
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qiime_sample-classifier_split-table.xml
|
6076 |
-rwxr-xr-x |
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qiime_sample-classifier_summarize.xml
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1904 |
-rwxr-xr-x |
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qiime_taxa_barplot.xml
|
3566 |
-rwxr-xr-x |
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qiime_taxa_collapse.xml
|
2826 |
-rwxr-xr-x |
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qiime_taxa_filter-seqs.xml
|
5208 |
-rwxr-xr-x |
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qiime_taxa_filter-table.xml
|
5216 |
-rwxr-xr-x |
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qiime_tools_export.xml
|
1003 |
-rwxr-xr-x |
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qiime_tools_export_collection.xml
|
944 |
-rwxr-xr-x |
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qiime_tools_export_paired_collection.xml
|
963 |
-rwxr-xr-x |
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qiime_tools_import.xml
|
13870 |
-rwxr-xr-x |
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qiime_vsearch_cluster-features-closed-reference.xml
|
4849 |
-rwxr-xr-x |
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qiime_vsearch_cluster-features-de-novo.xml
|
3616 |
-rwxr-xr-x |
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qiime_vsearch_cluster-features-open-reference.xml
|
5565 |
-rwxr-xr-x |
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qiime_vsearch_dereplicate-sequences.xml
|
2890 |
-rwxr-xr-x |
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qiime_vsearch_fastq-stats.xml
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2253 |
-rwxr-xr-x |
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qiime_vsearch_join-pairs.xml
|
6778 |
-rwxr-xr-x |
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qiime_vsearch_uchime-denovo.xml
|
4387 |
-rw-r--r-- |
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qiime_vsearch_uchime-ref.xml
|
4920 |
-rw-r--r-- |
