<?xml version="1.0" ?>
<tool id="qiime_composition_add-pseudocount" name="qiime composition add-pseudocount"
      version="2020.8">
  <description>Add pseudocount to table</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime composition add-pseudocount

--i-table=$itable

--p-pseudocount=$ppseudocount

--o-composition-table=ocompositiontable

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp ocompositiontable.qza $ocompositiontable

  ]]></command>
  <inputs>
    <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to which pseudocounts should be added.                                       [required]" name="itable" optional="False" type="data" />
    <param label="--p-pseudocount: INTEGER The value to add to all counts in the feature table. [default: 1]" name="ppseudocount" optional="True" type="integer" value="1" />
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <data format="qza" label="${tool.name} on ${on_string}: compositiontable.qza" name="ocompositiontable" />
    
  </outputs>

  <help><![CDATA[
Add pseudocount to table
###############################################################

Increment all counts in table by pseudocount.

Parameters
----------
table : FeatureTable[Frequency]
    The feature table to which pseudocounts should be added.
pseudocount : Int, optional
    The value to add to all counts in the feature table.

Returns
-------
composition_table : FeatureTable[Composition]
    The resulting feature table.
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>