view qiime2-2020.8/qiime_deblur_visualize-stats.xml @ 20:d93d8888f0b0 draft

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author florianbegusch
date Fri, 04 Sep 2020 12:44:24 +0000
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<?xml version="1.0" ?>
<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats"
      version="2020.8">
  <description>Visualize Deblur stats per sample.</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime deblur visualize-stats

--i-deblur-stats=$ideblurstats

--o-visualization=ovisualization

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp ostats.qza $ostats

;
qiime tools export  ovisualization.qzv --output-path out
&& mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization'

  ]]></command>
  <inputs>
    <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats        Summary statistics of the Deblur process.    [required]" name="ideblurstats" optional="False" type="data" />
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
    
  </outputs>

  <help><![CDATA[
Visualize Deblur stats per sample.
###############################################################

Display Deblur statistics per sample

Parameters
----------
deblur_stats : DeblurStats
    Summary statistics of the Deblur process.

Returns
-------
visualization : Visualization
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>