<?xml version="1.0" ?>
<tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs"
      version="2020.8">
  <description>View sequence associated with each feature</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime feature-table tabulate-seqs
# if $input_files_idata:
  # def list_dict_to_string(list_dict):
    # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
    # for d in list_dict[1:]:
      # set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
    # end for
    # return $file_list
  # end def
--i-data=$list_dict_to_string($input_files_idata)
# end if

--o-visualization=ovisualization

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp osampledtable.qza $osampledtable

;
qiime tools export  ovisualization.qzv --output-path out
&& mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization'

;
qiime tools export  ovisualization.qzv --output-path out
&& mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization'

  ]]></command>
  <inputs>
    <repeat name="input_files_idata" optional="False" title="--i-data">
      <param format="qza,no_unzip.zip" label="--i-data: ARTIFACT FeatureData[Sequence | AlignedSequence] The feature sequences to be tabulated.       [required]" name="additional_input" optional="False" type="data" />
    </repeat>
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
    
  </outputs>

  <help><![CDATA[
View sequence associated with each feature
###############################################################

Generate tabular view of feature identifier to sequence mapping, including
links to BLAST each sequence against the NCBI nt database.

Parameters
----------
data : FeatureData[Sequence | AlignedSequence]
    The feature sequences to be tabulated.

Returns
-------
visualization : Visualization
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>