<?xml version="1.0" ?>
<tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis" version="2019.4">
	<description> - Procrustes Analysis</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime diversity procrustes-analysis

--i-reference=$ireference
--i-other=$iother

#if str($pdimensions):
 --p-dimensions=$pdimensions
#end if

--o-transformed-reference=otransformedreference
--o-transformed-other=otransformedother
;
cp otransformedreference.qza $otransformedreference;
cp otransformedother.qza $otransformedother
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT  The ordination matrix to which data is fitted to. PCoAResults                                                     [required]" name="ireference" optional="False" type="data"/>
		<param format="qza,no_unzip.zip" label="--i-other: ARTIFACT      The ordination matrix that's fitted to the PCoAResults           reference ordination.                     [required]" name="iother" optional="False" type="data"/>
		<param label="--p-dimensions: INTEGER Range(1, None)                                                [default: 5]" name="pdimensions" optional="True" type="integer" min="1" value="5"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference"/>
		<data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother"/>
	</outputs>
	<help><![CDATA[
Procrustes Analysis
###################

Fit two ordination matrices with Procrustes analysis

Parameters
----------
reference : PCoAResults
    The ordination matrix to which data is fitted to.
other : PCoAResults
    The ordination matrix that's fitted to the reference ordination.
dimensions : Int % Range(1, None), optional
	\

Returns
-------
transformed_reference : PCoAResults
    A normalized version of the "reference" ordination matrix.
transformed_other : PCoAResults
    A normalized and fitted version of the "other" ordination matrix.
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>