Mercurial > repos > florianbegusch > qiime2_suite
view qiime2/qiime_feature-table_tabulate-seqs.xml @ 11:ea7a1c6be3c4 draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:37:40 +0000 |
parents | f190567fe3f6 |
children | a0a8d77a991c |
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<?xml version="1.0" ?> <tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs" version="2019.7"> <description> - View sequence associated with each feature</description> <requirements> <requirement type="package" version="2019.7">qiime2</requirement> </requirements> <command><![CDATA[ qiime feature-table tabulate-seqs --i-data=$idata --o-visualization=ovisualization ; qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' && cp -r out/* '$ovisualization.files_path' && mv '$ovisualization.files_path/index.html' '$ovisualization'; ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-data: ARTIFACT FeatureData[Sequence] The feature sequences to be tabulated. [required]" name="idata" optional="False" type="data"/> </inputs> <outputs> <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> </outputs> <help><![CDATA[ View sequence associated with each feature ########################################## Generate tabular view of feature identifier to sequence mapping, including links to BLAST each sequence against the NCBI nt database. Parameters ---------- data : FeatureData[Sequence] The feature sequences to be tabulated. Returns ------- visualization : Visualization ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>