# HG changeset patch
# User florianbegusch
# Date 1563348376 14400
# Node ID 255f48db74f8492dd363eedd6ae59e803233866b
# Parent  370e0b6e982627ceb3ccd7c226fa1ddcb3040d48
Hotfix

diff -r 370e0b6e9826 -r 255f48db74f8 qiime2/.idea/workspace.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/.idea/workspace.xml	Wed Jul 17 03:26:16 2019 -0400
@@ -0,0 +1,517 @@
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+    <option name="SHOW_DIALOG" value="false" />
+    <option name="HIGHLIGHT_CONFLICTS" value="true" />
+    <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
+    <option name="LAST_RESOLUTION" value="IGNORE" />
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+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_feature-classifier_classify-sklearn.xml">
+          <provider selected="true" editor-type-id="text-editor" />
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+      <file pinned="false" current-in-tab="false">
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+      </file>
+      <file pinned="false" current-in-tab="false">
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+          <provider selected="true" editor-type-id="text-editor" />
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+      </file>
+      <file pinned="false" current-in-tab="false">
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+  <component name="FindInProjectRecents">
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+  <component name="Git.Settings">
+    <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$/.." />
+  </component>
+  <component name="IdeDocumentHistory">
+    <option name="CHANGED_PATHS">
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+        <option value="$PROJECT_DIR$/qiime_feature-classifier_extract-reads.xml" />
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+  <component name="ProjectFrameBounds" extendedState="4">
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+    <option name="width" value="960" />
+    <option name="height" value="1054" />
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+  <component name="ProjectLevelVcsManager" settingsEditedManually="true" />
+  <component name="ProjectView">
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+      <foldersAlwaysOnTop value="true" />
+    </navigator>
+    <panes>
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+        <subPane>
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+              <item name="qiime2" type="b2602c69:ProjectViewProjectNode" />
+              <item name="qiime2" type="462c0819:PsiDirectoryNode" />
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+          <select />
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+      <pane id="Scope" />
+      <pane id="PackagesPane" />
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+  <component name="RunDashboard">
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+          <option name="name" value="ConfigurationTypeDashboardGroupingRule" />
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+        <RuleState>
+          <option name="name" value="StatusDashboardGroupingRule" />
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+      <option name="POLICY_FILE" value="$APPLICATION_HOME_DIR$/bin/appletviewer.policy" />
+      <method v="2">
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+      <method v="2">
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+      <option name="TEST_OBJECT" value="class" />
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+      <properties />
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+  <component name="SvnConfiguration">
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+      <option name="number" value="Default" />
+      <option name="presentableId" value="Default" />
+      <updated>1562958108875</updated>
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+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="705">
+          <caret line="47" column="65" selection-start-line="47" selection-start-column="65" selection-end-line="47" selection-end-column="65" />
+        </state>
+      </provider>
+    </entry>
+  </component>
+  <component name="masterDetails">
+    <states>
+      <state key="GlobalLibrariesConfigurable.UI">
+        <settings>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.2" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
+      <state key="JdkListConfigurable.UI">
+        <settings>
+          <last-edited>1.8</last-edited>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.2" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
+      <state key="ProjectJDKs.UI">
+        <settings>
+          <last-edited>1.8</last-edited>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.2" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
+      <state key="ProjectLibrariesConfigurable.UI">
+        <settings>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.2" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
+    </states>
+  </component>
+</project>
\ No newline at end of file
diff -r 370e0b6e9826 -r 255f48db74f8 qiime2/qiime_citation.xml
--- a/qiime2/qiime_citation.xml	Wed Jul 17 03:05:17 2019 -0400
+++ b/qiime2/qiime_citation.xml	Wed Jul 17 03:26:16 2019 -0400
@@ -5,7 +5,7 @@
         @article{10.7287/peerj.preprints.27295v2,
          title = {QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science},
          author = {Bolyen, Evan and Rideout, Jai Ram and Dillon, Matthew R and Bokulich, Nicholas A and Abnet, Christian and Al-Ghalith, Gabriel A and Alexander, Harriet and Alm, Eric J and Arumugam, Manimozhiyan and Asnicar, Francesco and Bai, Yang and Bisanz, Jordan E and Bittinger, Kyle and Brejnrod, Asker and Brislawn, Colin J and Brown, C Titus and Callahan, Benjamin J and Caraballo-Rodríguez, Andrés Mauricio and Chase, John and Cope, Emily and Da Silva, Ricardo and Dorrestein, Pieter C and Douglas, Gavin M and Durall, Daniel M and Duvallet, Claire and Edwardson, Christian F and Ernst, Madeleine and Estaki, Mehrbod and Fouquier, Jennifer and Gauglitz, Julia M and Gibson, Deanna L and Gonzalez, Antonio and Gorlick, Kestrel and Guo, Jiarong and Hillmann, Benjamin and Holmes, Susan and Holste, Hannes and Huttenhower, Curtis and Huttley, Gavin and Janssen, Stefan and Jarmusch, Alan K and Jiang, Lingjing and Kaehler, Benjamin and Kang, Kyo Bin and Keefe, Christopher R and Keim, Paul and Kelley, Scott T and Knights, Dan and Koester, Irina and Kosciolek, Tomasz and Kreps, Jorden and Langille, Morgan GI and Lee, Joslynn and Ley, Ruth and Liu, Yong-Xin and Loftfield, Erikka and Lozupone, Catherine and Maher, Massoud and Marotz, Clarisse and Martin, Bryan D and McDonald, Daniel and McIver, Lauren J and Melnik, Alexey V and Metcalf, Jessica L and Morgan, Sydney C and Morton, Jamie and Naimey, Ahmad Turan and Navas-Molina, Jose A and Nothias, Louis Felix and Orchanian, Stephanie B and Pearson, Talima and Peoples, Samuel L and Petras, Daniel and Preuss, Mary Lai and Pruesse, Elmar and Rasmussen, Lasse Buur and Rivers, Adam and Robeson, II, Michael S and Rosenthal, Patrick and Segata, Nicola and Shaffer, Michael and Shiffer, Arron and Sinha, Rashmi and Song, Se Jin and Spear, John R and Swafford, Austin D and Thompson, Luke R and Torres, Pedro J and Trinh, Pauline and Tripathi, Anupriya and Turnbaugh, Peter J and Ul-Hasan, Sabah and van der Hooft, Justin JJ and Vargas, Fernando and Vázquez-Baeza, Yoshiki and Vogtmann, Emily and von Hippel, Max and Walters, William and Wan, Yunhu and Wang, Mingxun and Warren, Jonathan and Weber, Kyle C and Williamson, Chase HD and Willis, Amy D and Xu, Zhenjiang Zech and Zaneveld, Jesse R and Zhang, Yilong and Zhu, Qiyun and Knight, Rob and Caporaso, J Gregory},
-         year = 2019,
+         year = 2018,
          month = dec,
          keywords = {microbiome, bioinformatics, data science, software, microbial ecology, reproducibility},
          abstract = {
diff -r 370e0b6e9826 -r 255f48db74f8 qiime2/qiime_sample-classifier_maturity-index.xml
--- a/qiime2/qiime_sample-classifier_maturity-index.xml	Wed Jul 17 03:05:17 2019 -0400
+++ b/qiime2/qiime_sample-classifier_maturity-index.xml	Wed Jul 17 03:26:16 2019 -0400
@@ -77,7 +77,7 @@
 	 --p-random-state="$prandomstate"
 	#end if
 	;
-	qiime tools export ovisualization.qzv --output-dir out   && mkdir -p '$ovisualization.files_path'
+	qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
 	&& cp -r out/* '$ovisualization.files_path'
 	&& mv '$ovisualization.files_path/index.html' '$ovisualization'
 	]]>