# HG changeset patch # User florianbegusch # Date 1599130949 0 # Node ID e1482b6ee5ed855378cdf7ecece03174f9559bf0 # Parent 424d74a76037cd7cab018463f4087ff52be7d790 Uploaded diff -r 424d74a76037 -r e1482b6ee5ed qiime2/qiime_alignment_mafft.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_alignment_mafft.xml Thu Sep 03 11:02:29 2020 +0000 @@ -0,0 +1,74 @@ + + + De novo multiple sequence alignment with MAFFT + + qiime2 + + + + + + + + + + + + + + + + + + + + + + qiime_citation.xml + + + \ No newline at end of file diff -r 424d74a76037 -r e1482b6ee5ed tool_data/qiime_rep_set.loc --- a/tool_data/qiime_rep_set.loc Thu Sep 03 10:53:49 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,9 +0,0 @@ -silva_132_release_rep_set_all_99_silva132_99 silva (132_release) - rep_set_all - 99 - 99_otus silva_132_release_rep_set_all_99_silva132_99.fna /home/galaxy/galaxy/tool-data/qiime_rep_set/silva_132_release_rep_set_all_99_silva132_99.fna -silva_132_release_rep_set_all_97_silva132_97 silva (132_release) - rep_set_all - 97 - 97_otus silva_132_release_rep_set_all_97_silva132_97.fna /home/galaxy/galaxy/tool-data/qiime_rep_set/silva_132_release_rep_set_all_97_silva132_97.fna -silva_128_release_rep_set_all_97_97_otus silva (128_release) - rep_set_all - 97 - 97_otus silva_128_release_rep_set_all_97_97_otus.fasta /home/galaxy/galaxy/tool-data/qiime_rep_set/silva_128_release_rep_set_all_97_97_otus.fasta -unite_20.11.2016_sh_refs_qiime_ver7_97_20.11.2016 unite (20.11.2016) - sh_refs_qiime_ver7_97_20 unite_20.11.2016_sh_refs_qiime_ver7_97_20.11.2016.fasta /home/galaxy/galaxy/tool-data/qiime_rep_set/unite_20.11.2016_sh_refs_qiime_ver7_97_20.11.2016.fasta -greengenes_13_8_97_otus greengenes (13_8_relese) - 97_otus greengenes_13_8_97_otus.fasta /home/galaxy/galaxy/tool-data/qiime_rep_set/greengenes_13_8_97_otus.fasta -greengenes_13_8_99_otus greengenes (13_8_relese) - 99_otus greengenes_13_8_99_otus.fasta /home/galaxy/galaxy/tool-data/qiime_rep_set/greengenes_13_8_99_otus.fasta -GreenGenes_13_8_99_V4_GTGCCAGCMGCCGCGGTAA_GGACTACHVHHHTWTCTAAT GreenGenes_13_8_99_V4_GTGCCAGCMGCCGCGGTAA_GGACTACHVHHHTWTCTAAT GreenGenes_13_8_99_V4_GTGCCAGCMGCCGCGGTAA_GGACTACHVHHHTWTCTAAT.qza /home/galaxy/galaxy/tool-data/QIIME2_reference_classifiers/GreenGenes_13_8_99_V4_GTGCCAGCMGCCGCGGTAA_GGACTACHVHHHTWTCTAAT.qza -GreenGenes_13_8_99_V4_GTGYCAGCMGCCGCGGTAA_GGACTACNVGGGTWTCTAAT GreenGenes_13_8_99_V4_GTGYCAGCMGCCGCGGTAA_GGACTACNVGGGTWTCTAAT GreenGenes_13_8_99_V4_GTGYCAGCMGCCGCGGTAA_GGACTACNVGGGTWTCTAAT.qza /home/galaxy/galaxy/tool-data/QIIME2_reference_classifiers/GreenGenes_13_8_99_V4_GTGYCAGCMGCCGCGGTAA_GGACTACNVGGGTWTCTAAT.qza -GreenGenes_13_8_97_V1_V2_AGAGTTTGATCCTGGCTCAG_CTGCTGCCTYCCGTA GreenGenes_13_8_97_V1_V2_AGAGTTTGATCCTGGCTCAG_CTGCTGCCTYCCGTA GreenGenes_13_8_97_V1_V2_AGAGTTTGATCCTGGCTCAG_CTGCTGCCTYCCGTA.qza /home/galaxy/galaxy/tool-data/QIIME2_reference_classifiers/GreenGenes_13_8_97_V1_V2_AGAGTTTGATCCTGGCTCAG_CTGCTGCCTYCCGTA.qza diff -r 424d74a76037 -r e1482b6ee5ed tool_data/qiime_taxonomy.loc --- a/tool_data/qiime_taxonomy.loc Thu Sep 03 10:53:49 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,8 +0,0 @@ -silva_132_release_taxonomy_all_99_taxonomy_all_levels silva (132_release) - taxonomy_all - 99 - taxonomy_all_levels silva_132_release_taxonomy_all_99_taxonomy_all_levels.txt /home/galaxy/galaxy/tool-data/qiime_taxonomy/silva_132_release_taxonomy_all_99_taxonomy_all_levels.txt -silva_132_release_taxonomy_all_97_taxonomy_all_levels silva (132_release) - taxonomy_all - 97 - taxonomy_all_levels silva_132_release_taxonomy_all_97_taxonomy_all_levels.txt /home/galaxy/galaxy/tool-data/qiime_taxonomy/silva_132_release_taxonomy_all_97_taxonomy_all_levels.txt -greengenes_13_8_97_otu_taxonomy greengenes (13_8) - 97_otu_taxonomy greengenes_13_8_97_otu_taxonomy.txt /home/galaxy/galaxy/tool-data/qiime_taxonomy/greengenes_13_8_97_otu_taxonomy.txt -greengenes_13_8_99_otu_taxonomy greengenes (13_8) - 99_otu_taxonomy greengenes_13_8_99_otu_taxonomy.txt /home/galaxy/galaxy/tool-data/qiime_taxonomy/greengenes_13_8_99_otu_taxonomy.txt -silva_128_release_taxonomy_all_97_taxonomy_all_levels silva (128_release) - taxonomy_all - 97 - taxonomy_all_levels silva_128_release_taxonomy_all_97_taxonomy_all_levels.txt /home/galaxy/galaxy/tool-data/qiime_taxonomy/silva_128_release_taxonomy_all_97_taxonomy_all_levels.txt -unite_20.11.2016_sh_taxonomy_qiime_ver7_97_20.11.2016 unite (20.11.2016) - sh_taxonomy_qiime_ver7_97_20 unite_20.11.2016_sh_taxonomy_qiime_ver7_97_20.11.2016.txt /home/galaxy/galaxy/tool-data/qiime_taxonomy/unite_20.11.2016_sh_taxonomy_qiime_ver7_97_20.11.2016.txt -taxmap_ncbi_ssu_ref_132 taxmap_ncbi_ssu_ref_132 taxmap_ncbi_ssu_ref_132.txt /home/galaxy/galaxy/tool-data/qiime_taxonomy/taxmap_ncbi_ssu_ref_132.txt -taxmap_slv_ssu_ref_132 taxmap_slv_ssu_ref_132 taxmap_slv_ssu_ref_132.txt /home/galaxy/galaxy/tool-data/qiime_taxonomy/taxmap_slv_ssu_ref_132.txt diff -r 424d74a76037 -r e1482b6ee5ed tool_data_table_conf.xml.sample --- a/tool_data_table_conf.xml.sample Thu Sep 03 10:53:49 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,12 +0,0 @@ - - - value, name, dbkey, path - -
- - value, name, dbkey, path - -
-
- -