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1 <?xml version="1.0" ?>
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2 <tool id="qiime_diversity-lib_shannon-entropy" name="qiime diversity-lib shannon-entropy"
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3 version="2020.8">
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4 <description>Shannon\'s Entropy</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime diversity-lib shannon-entropy
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10
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11 --i-table=$itable
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12
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13 #if $pdropundefinedsamples:
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14 --p-drop-undefined-samples
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15 #end if
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16
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17 --o-vector=ovector
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18
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19 #if str($examples) != 'None':
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20 --examples=$examples
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21 #end if
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22
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23 ;
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24 cp ovector.qza $ovector
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25
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26 ]]></command>
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27 <inputs>
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28 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table containing the samples for which Shannon\'s Entropy should be computed. [required]" name="itable" optional="False" type="data" />
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29 <param label="--p-drop-undefined-samples: --p-drop-undefined-samples: / --p-no-drop-undefined-samples Samples with no observed features produce undefined (NaN) values. If true, these samples are dropped from the output vector. [default: False]" name="pdropundefinedsamples" selected="False" type="boolean" />
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30 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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31
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32 </inputs>
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33
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34 <outputs>
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35 <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" />
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36
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37 </outputs>
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38
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39 <help><![CDATA[
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40 Shannon\'s Entropy
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41 ###############################################################
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42
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43 Compute Shannon's Entropy for each sample in a feature table
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44
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45 Parameters
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46 ----------
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47 table : FeatureTable[Frequency | RelativeFrequency]
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48 The feature table containing the samples for which Shannon's Entropy
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49 should be computed.
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50 drop_undefined_samples : Bool, optional
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51 Samples with no observed features produce undefined (NaN) values. If
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52 true, these samples are dropped from the output vector.
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53
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54 Returns
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55 -------
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56 vector : SampleData[AlphaDiversity]
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57 Vector containing per-sample values for Shannon's Entropy.
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58 ]]></help>
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59 <macros>
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60 <import>qiime_citation.xml</import>
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61 </macros>
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62 <expand macro="qiime_citation"/>
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63 </tool> |
