|
0
|
1 <?xml version="1.0" ?>
|
|
|
2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root"
|
|
|
3 version="2020.8">
|
|
|
4 <description>Midpoint root an unrooted phylogenetic tree.</description>
|
|
|
5 <requirements>
|
|
|
6 <requirement type="package" version="2020.8">qiime2</requirement>
|
|
|
7 </requirements>
|
|
|
8 <command><![CDATA[
|
|
|
9 qiime phylogeny midpoint-root
|
|
|
10
|
|
|
11 --i-tree=$itree
|
|
|
12
|
|
|
13 --o-rooted-tree=orootedtree
|
|
|
14
|
|
|
15 #if str($examples) != 'None':
|
|
|
16 --examples=$examples
|
|
|
17 #end if
|
|
|
18
|
|
|
19 ;
|
|
|
20 cp orootedtree.qza $orootedtree
|
|
|
21
|
|
|
22 ]]></command>
|
|
|
23 <inputs>
|
|
|
24 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data" />
|
|
|
25 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
|
|
|
26
|
|
|
27 </inputs>
|
|
|
28
|
|
|
29 <outputs>
|
|
|
30 <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree" />
|
|
|
31
|
|
|
32 </outputs>
|
|
|
33
|
|
|
34 <help><![CDATA[
|
|
|
35 Midpoint root an unrooted phylogenetic tree.
|
|
|
36 ###############################################################
|
|
|
37
|
|
|
38 Midpoint root an unrooted phylogenetic tree.
|
|
|
39
|
|
|
40 Parameters
|
|
|
41 ----------
|
|
|
42 tree : Phylogeny[Unrooted]
|
|
|
43 The phylogenetic tree to be rooted.
|
|
|
44
|
|
|
45 Returns
|
|
|
46 -------
|
|
|
47 rooted_tree : Phylogeny[Rooted]
|
|
|
48 The rooted phylogenetic tree.
|
|
|
49 ]]></help>
|
|
|
50 <macros>
|
|
|
51 <import>qiime_citation.xml</import>
|
|
|
52 </macros>
|
|
|
53 <expand macro="qiime_citation"/>
|
|
|
54 </tool> |
