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comparison qiime2-2020.8/qiime_diversity_procrustes-analysis.xml @ 0:5c352d975ef7 draft

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author florianbegusch
date Thu, 03 Sep 2020 09:33:04 +0000
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1 <?xml version="1.0" ?>
2 <tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis"
3 version="2020.8">
4 <description>Procrustes Analysis</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime diversity procrustes-analysis
10
11 --i-reference=$ireference
12
13 --i-other=$iother
14
15 --p-dimensions=$pdimensions
16
17 --o-transformed-reference=otransformedreference
18
19 --o-transformed-other=otransformedother
20
21 #if str($examples) != 'None':
22 --examples=$examples
23 #end if
24
25 ;
26 cp otransformedother.qza $otransformedother
27
28 ]]></command>
29 <inputs>
30 <param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT The ordination matrix to which data is fitted to. PCoAResults [required]" name="ireference" optional="False" type="data" />
31 <param format="qza,no_unzip.zip" label="--i-other: ARTIFACT The ordination matrix that\'s fitted to the PCoAResults reference ordination. [required]" name="iother" optional="False" type="data" />
32 <param label="--p-dimensions: INTEGER Range(1, None) [default: 5]" min="1" name="pdimensions" optional="True" type="integer" value="5" />
33 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
34
35 </inputs>
36
37 <outputs>
38 <data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference" />
39 <data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother" />
40
41 </outputs>
42
43 <help><![CDATA[
44 Procrustes Analysis
45 ###############################################################
46
47 Fit two ordination matrices with Procrustes analysis
48
49 Parameters
50 ----------
51 reference : PCoAResults
52 The ordination matrix to which data is fitted to.
53 other : PCoAResults
54 The ordination matrix that's fitted to the reference ordination.
55 dimensions : Int % Range(1, None), optional
56
57 Returns
58 -------
59 transformed_reference : PCoAResults
60 A normalized version of the "reference" ordination matrix.
61 transformed_other : PCoAResults
62 A normalized and fitted version of the "other" ordination matrix.
63 ]]></help>
64 <macros>
65 <import>qiime_citation.xml</import>
66 </macros>
67 <expand macro="qiime_citation"/>
68 </tool>