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comparison qiime2-2020.8/qiime_feature-classifier_fit-classifier-sklearn.xml @ 0:5c352d975ef7 draft

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author florianbegusch
date Thu, 03 Sep 2020 09:33:04 +0000
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1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-classifier_fit-classifier-sklearn" name="qiime feature-classifier fit-classifier-sklearn"
3 version="2020.8">
4 <description>Train an almost arbitrary scikit-learn classifier</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime feature-classifier fit-classifier-sklearn
10
11 --i-reference-reads=$ireferencereads
12
13 --i-reference-taxonomy=$ireferencetaxonomy
14
15 #if str($iclassweight) != 'None':
16 --i-class-weight=$iclassweight
17 #end if
18
19 --p-classifier-specification=$pclassifierspecification
20
21 --o-classifier=oclassifier
22
23 #if str($examples) != 'None':
24 --examples=$examples
25 #end if
26
27 ;
28 cp oclassifier.qza $oclassifier
29
30 ]]></command>
31 <inputs>
32 <param format="qza,no_unzip.zip" label="--i-reference-reads: ARTIFACT FeatureData[Sequence] [required]" name="ireferencereads" optional="False" type="data" />
33 <param format="qza,no_unzip.zip" label="--i-reference-taxonomy: ARTIFACT FeatureData[Taxonomy] [required]" name="ireferencetaxonomy" optional="False" type="data" />
34 <param format="qza,no_unzip.zip" label="--i-class-weight: ARTIFACT FeatureTable[RelativeFrequency] [optional]" name="iclassweight" optional="False" type="data" />
35 <param label="--p-classifier-specification: TEXT [required]" name="pclassifierspecification" optional="False" type="text" />
36 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
37
38 </inputs>
39
40 <outputs>
41 <data format="qza" label="${tool.name} on ${on_string}: classifier.qza" name="oclassifier" />
42
43 </outputs>
44
45 <help><![CDATA[
46 Train an almost arbitrary scikit-learn classifier
47 ###############################################################
48
49 Train a scikit-learn classifier to classify reads.
50
51 Parameters
52 ----------
53 reference_reads : FeatureData[Sequence]
54 reference_taxonomy : FeatureData[Taxonomy]
55 classifier_specification : Str
56 class_weight : FeatureTable[RelativeFrequency], optional
57
58 Returns
59 -------
60 classifier : TaxonomicClassifier
61 ]]></help>
62 <macros>
63 <import>qiime_citation.xml</import>
64 </macros>
65 <expand macro="qiime_citation"/>
66 </tool>