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comparison qiime2-2020.8/qiime_feature-table_merge-seqs.xml @ 0:5c352d975ef7 draft

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author florianbegusch
date Thu, 03 Sep 2020 09:33:04 +0000
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1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_merge-seqs" name="qiime feature-table merge-seqs"
3 version="2020.8">
4 <description>Combine collections of feature sequences</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime feature-table merge-seqs
10 # if $input_files_idata:
11 # def list_dict_to_string(list_dict):
12 # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
13 # for d in list_dict[1:]:
14 # set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
15 # end for
16 # return $file_list
17 # end def
18 --i-data=$list_dict_to_string($input_files_idata)
19 # end if
20
21 --o-merged-data=omergeddata
22
23 #if str($examples) != 'None':
24 --examples=$examples
25 #end if
26
27 ;
28 cp omergeddata.qza $omergeddata
29
30 ]]></command>
31 <inputs>
32 <repeat name="input_files_idata" optional="False" title="--i-data">
33 <param format="qza,no_unzip.zip" label="--i-data: ARTIFACTS... List[FeatureData[Sequence]] The collection of feature sequences to be merged. [required]" name="additional_input" optional="False" type="data" />
34 </repeat>
35 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
36
37 </inputs>
38
39 <outputs>
40 <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata" />
41
42 </outputs>
43
44 <help><![CDATA[
45 Combine collections of feature sequences
46 ###############################################################
47
48 Combines feature data objects which may or may not contain data for the
49 same features. If different feature data is present for the same feature id
50 in the inputs, the data from the first will be propagated to the result.
51
52 Parameters
53 ----------
54 data : List[FeatureData[Sequence]]
55 The collection of feature sequences to be merged.
56
57 Returns
58 -------
59 merged_data : FeatureData[Sequence]
60 The resulting collection of feature sequences containing all feature
61 sequences provided.
62 ]]></help>
63 <macros>
64 <import>qiime_citation.xml</import>
65 </macros>
66 <expand macro="qiime_citation"/>
67 </tool>