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comparison qiime2-2020.8/qiime_feature-table_relative-frequency.xml @ 0:5c352d975ef7 draft

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author florianbegusch
date Thu, 03 Sep 2020 09:33:04 +0000
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1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_relative-frequency" name="qiime feature-table relative-frequency"
3 version="2020.8">
4 <description>Convert to relative frequencies</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime feature-table relative-frequency
10
11 --i-table=$itable
12
13 --o-relative-frequency-table=orelativefrequencytable
14
15 #if str($examples) != 'None':
16 --examples=$examples
17 #end if
18
19 ;
20 cp orelativefrequencytable.qza $orelativefrequencytable
21
22 ]]></command>
23 <inputs>
24 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be converted into relative frequencies. [required]" name="itable" optional="False" type="data" />
25 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
26
27 </inputs>
28
29 <outputs>
30 <data format="qza" label="${tool.name} on ${on_string}: relativefrequencytable.qza" name="orelativefrequencytable" />
31
32 </outputs>
33
34 <help><![CDATA[
35 Convert to relative frequencies
36 ###############################################################
37
38 Convert frequencies to relative frequencies by dividing each frequency in a
39 sample by the sum of frequencies in that sample.
40
41 Parameters
42 ----------
43 table : FeatureTable[Frequency]
44 The feature table to be converted into relative frequencies.
45
46 Returns
47 -------
48 relative_frequency_table : FeatureTable[RelativeFrequency]
49 The resulting relative frequency feature table.
50 ]]></help>
51 <macros>
52 <import>qiime_citation.xml</import>
53 </macros>
54 <expand macro="qiime_citation"/>
55 </tool>