Mercurial > repos > florianbegusch > qiime2_suite_zmf
diff qiime2-2020.8/qiime_diversity-lib_pielou-evenness.xml @ 0:5c352d975ef7 draft
Uploaded
author | florianbegusch |
---|---|
date | Thu, 03 Sep 2020 09:33:04 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2-2020.8/qiime_diversity-lib_pielou-evenness.xml Thu Sep 03 09:33:04 2020 +0000 @@ -0,0 +1,63 @@ +<?xml version="1.0" ?> +<tool id="qiime_diversity-lib_pielou-evenness" name="qiime diversity-lib pielou-evenness" + version="2020.8"> + <description>Pielou\'s Evenness</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime diversity-lib pielou-evenness + +--i-table=$itable + +#if $pdropundefinedsamples: + --p-drop-undefined-samples +#end if + +--o-vector=ovector + +#if str($examples) != 'None': +--examples=$examples +#end if + +; +cp ovector.qza $ovector + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table containing the samples for which Pielou\'s evenness should be computed. [required]" name="itable" optional="False" type="data" /> + <param label="--p-drop-undefined-samples: --p-drop-undefined-samples: / --p-no-drop-undefined-samples Samples with fewer than two observed features produce undefined (NaN) values. If true, these samples are dropped from the output vector. [default: False]" name="pdropundefinedsamples" selected="False" type="boolean" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" /> + + </outputs> + + <help><![CDATA[ +Pielou\'s Evenness +############################################################### + +Compute Pielou's Evenness for each sample in a feature table + +Parameters +---------- +table : FeatureTable[Frequency | RelativeFrequency] + The feature table containing the samples for which Pielou's evenness + should be computed. +drop_undefined_samples : Bool, optional + Samples with fewer than two observed features produce undefined (NaN) + values. If true, these samples are dropped from the output vector. + +Returns +------- +vector : SampleData[AlphaDiversity] + Vector containing per-sample values for Pielou's Evenness. + ]]></help> + <macros> + <import>qiime_citation.xml</import> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file