--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2-2020.8/qiime_longitudinal_anova.xml	Thu Sep 03 09:33:04 2020 +0000
@@ -0,0 +1,100 @@
+<?xml version="1.0" ?>
+<tool id="qiime_longitudinal_anova" name="qiime longitudinal anova"
+      version="2020.8">
+  <description>ANOVA test</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime longitudinal anova
+# if $input_files_mmetadatafile:
+  # def list_dict_to_string(list_dict):
+    # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
+    # for d in list_dict[1:]:
+      # set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
+    # end for
+    # return $file_list
+  # end def
+--m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
+# end if
+
+#if $pformula:
+ --p-formula
+#end if
+
+#if str($psstype) != 'None':
+--p-sstype=$psstype
+#end if
+
+--o-visualization=ovisualization
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp ohierarchy.qza $ohierarchy
+
+;
+qiime tools export  ovisualization.qzv --output-path out
+&& mkdir -p '$ovisualization.files_path'
+&& cp -r out/* '$ovisualization.files_path'
+&& mv '$ovisualization.files_path/index.html' '$ovisualization'
+
+  ]]></command>
+  <inputs>
+    <repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file">
+      <param format="tabular,qza,no_unzip.zip" label="--m-metadata-file: METADATA... (multiple          Sample metadata containing formula terms. arguments will be merged)                                                     [required]" name="additional_input" optional="False" type="data" />
+    </repeat>
+    <param label="--p-formula: --p-formula: TEXT     R-style formula specifying the model. All terms must be present in the sample metadata or metadata-transformable artifacts and can be continuous or categorical metadata columns. Formulae will be in the format \'a ~ b + c\', where \'a\' is the metric (dependent variable) and \'b\' and \'c\' are independent covariates. Use \'+\' to add a variable; \'+ a:b\' to add an interaction between variables a and b; \'*\' to include a variable and all interactions; and \'-\' to subtract a particular term (e.g., an interaction term). See https://patsy.readthedocs.io/en/latest/formulas.html for full documentation of valid formula operators. Always enclose formulae in quotes to avoid unpleasant surprises.                                   [required]" name="pformula" selected="False" type="boolean" />
+    <param label="--p-sstype: " name="psstype" optional="True" type="select">
+      <option selected="True" value="None">Selection is Optional</option>
+      <option value="I">I</option>
+      <option value="II">II</option>
+      <option value="III">III</option>
+    </param>
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
+    
+  </outputs>
+
+  <help><![CDATA[
+ANOVA test
+###############################################################
+
+Perform an ANOVA test on any factors present in a metadata file and/or
+metadata-transformable artifacts. This is followed by pairwise t-tests to
+examine pairwise differences between categorical sample groups.
+
+Parameters
+----------
+metadata : Metadata
+    Sample metadata containing formula terms.
+formula : Str
+    R-style formula specifying the model. All terms must be present in the
+    sample metadata or metadata-transformable artifacts and can be
+    continuous or categorical metadata columns. Formulae will be in the
+    format "a ~ b + c", where "a" is the metric (dependent variable) and
+    "b" and "c" are independent covariates. Use "+" to add a variable; "+
+    a:b" to add an interaction between variables a and b; "*" to include a
+    variable and all interactions; and "-" to subtract a particular term
+    (e.g., an interaction term). See
+    https://patsy.readthedocs.io/en/latest/formulas.html for full
+    documentation of valid formula operators. Always enclose formulae in
+    quotes to avoid unpleasant surprises.
+sstype : Str % Choices('I', 'II', 'III'), optional
+    Type of sum of squares calculation to perform (I, II, or III).
+
+Returns
+-------
+visualization : Visualization
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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