diff qiime2-2020.8/qiime_sample-classifier_summarize.xml @ 0:5c352d975ef7 draft

Uploaded
author florianbegusch
date Thu, 03 Sep 2020 09:33:04 +0000
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+++ b/qiime2-2020.8/qiime_sample-classifier_summarize.xml	Thu Sep 03 09:33:04 2020 +0000
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+<?xml version="1.0" ?>
+<tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize"
+      version="2020.8">
+  <description>Summarize parameter and feature extraction information for a trained estimator.</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime sample-classifier summarize
+
+--i-sample-estimator=$isampleestimator
+
+--o-visualization=ovisualization
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp otesttable.qza $otesttable
+
+;
+qiime tools export  ovisualization.qzv --output-path out
+&& mkdir -p '$ovisualization.files_path'
+&& cp -r out/* '$ovisualization.files_path'
+&& mv '$ovisualization.files_path/index.html' '$ovisualization'
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor.                               [required]" name="isampleestimator" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Summarize parameter and feature extraction information for a trained estimator.
+###############################################################
+
+
+Summarize parameter and feature extraction information for a trained
+estimator.
+
+Parameters
+----------
+sample_estimator : SampleEstimator[Classifier | Regressor]
+    Sample estimator trained with fit_classifier or fit_regressor.
+
+Returns
+-------
+visualization : Visualization
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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