Mercurial > repos > florianbegusch > qiime2_suite_zmf
diff qiime2-2020.8/qiime_sample-classifier_summarize.xml @ 0:5c352d975ef7 draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:33:04 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2-2020.8/qiime_sample-classifier_summarize.xml Thu Sep 03 09:33:04 2020 +0000 @@ -0,0 +1,61 @@ +<?xml version="1.0" ?> +<tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize" + version="2020.8"> + <description>Summarize parameter and feature extraction information for a trained estimator.</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime sample-classifier summarize + +--i-sample-estimator=$isampleestimator + +--o-visualization=ovisualization + +#if str($examples) != 'None': +--examples=$examples +#end if + +; +cp otesttable.qza $otesttable + +; +qiime tools export ovisualization.qzv --output-path out +&& mkdir -p '$ovisualization.files_path' +&& cp -r out/* '$ovisualization.files_path' +&& mv '$ovisualization.files_path/index.html' '$ovisualization' + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" /> + + </outputs> + + <help><![CDATA[ +Summarize parameter and feature extraction information for a trained estimator. +############################################################### + + +Summarize parameter and feature extraction information for a trained +estimator. + +Parameters +---------- +sample_estimator : SampleEstimator[Classifier | Regressor] + Sample estimator trained with fit_classifier or fit_regressor. + +Returns +------- +visualization : Visualization + ]]></help> + <macros> + <import>qiime_citation.xml</import> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file