2
+ − 1 <?xml version="1.0" ?>
+ − 2 <tool id="qiime_metadata_tabulate" name="qiime metadata tabulate" version="2019.4">
+ − 3 <description> - Interactively explore Metadata in an HTML table</description>
+ − 4 <requirements>
+ − 5 <requirement type="package" version="2019.4">qiime2</requirement>
+ − 6 </requirements>
+ − 7 <command><![CDATA[
+ − 8 qiime metadata tabulate
+ − 9
+ − 10
+ − 11 #def list_dict_to_string(list_dict):
+ − 12 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
+ − 13 #for d in list_dict[1:]:
+ − 14 #set $file_list = $file_list + ' --m-input-file=' + d['additional_input'].__getattr__('file_name')
+ − 15 #end for
+ − 16 #return $file_list
+ − 17 #end def
+ − 18 --m-input-file=$list_dict_to_string($input_files_minputfile)
+ − 19
+ − 20
+ − 21 #if $ppagesize:
+ − 22 --p-page-size=$ppagesize
+ − 23 #end if
+ − 24
+ − 25 --o-visualization=ovisualization
+ − 26 ;
+ − 27 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'
+ − 28 && cp -r out/* '$ovisualization.files_path'
+ − 29 && mv '$ovisualization.files_path/index.html' '$ovisualization'
+ − 30 ]]></command>
+ − 31 <inputs>
+ − 32 <param label="--p-page-size: INTEGER The maximum number of Metadata records to display per page [default: 100]" name="ppagesize" optional="True" type="integer" value="100"/>
+ − 33
+ − 34 <repeat name="input_files_minputfile" optional="False" title="--m-input-file">
+ − 35 <param label="--m-input-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. The metadata to tabulate. [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
+ − 36 </repeat>
+ − 37
+ − 38 </inputs>
+ − 39 <outputs>
+ − 40 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
+ − 41 </outputs>
+ − 42 <help><![CDATA[
+ − 43 Interactively explore Metadata in an HTML table
+ − 44 ###############################################
+ − 45
+ − 46 Generate a tabular view of Metadata. The output visualization supports
+ − 47 interactive filtering, sorting, and exporting to common file formats.
+ − 48
+ − 49 Parameters
+ − 50 ----------
+ − 51 input : Metadata
+ − 52 The metadata to tabulate.
+ − 53 page_size : Int, optional
+ − 54 The maximum number of Metadata records to display per page
+ − 55
+ − 56 Returns
+ − 57 -------
+ − 58 visualization : Visualization
+ − 59 ]]></help>
+ − 60 <macros>
+ − 61 <import>qiime_citation.xml</import>
+ − 62 </macros>
+ − 63 <expand macro="qiime_citation"/>
+ − 64 </tool>
