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1 <?xml version="1.0" ?>
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2 <tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis" version="2018.4">
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3 <description> - Procrustes Analysis</description>
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4 <requirements>
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5 <requirement type="package" version="2018.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime diversity procrustes-analysis --i-reference=$ireference --i-other=$iother
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9
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10 #if $pdimensions:
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11 --p-dimensions=$pdimensions
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12 #end if
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13
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14 --o-transformed-other=otransformedother --o-transformed-reference=otransformedreference
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15
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16 #if str($cmdconfig) != 'None':
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17 --cmd-config=$cmdconfig
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18 #end if
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19 ;
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20 cp otransformedother.qza $otransformedother;
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21 cp otransformedreference.qza $otransformedreference;
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22 ]]></command>
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23 <inputs>
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24 <param format="qza,no_unzip.zip" label="--i-reference: PCoAResults The ordination matrix to which data is fitted to. [required]" name="ireference" optional="False" type="data"/>
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25 <param format="qza,no_unzip.zip" label="--i-other: PCoAResults The ordination matrix that's fitted to the reference ordination. [required]" name="iother" optional="False" type="data"/>
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26
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27 <param label="--p-dimensions: [default: 5]" name="pdimensions" optional="True" type="integer" value="5"/>
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28
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29 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
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30 </inputs>
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31 <outputs>
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32 <data format="qza" label="${tool.name} on ${on_string}: transformed-other.qza" name="otransformedother"/>
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33 <data format="qza" label="${tool.name} on ${on_string}: transformed-reference.qza" name="otransformedreference"/>
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34 </outputs>
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35 <help><![CDATA[
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36 Procrustes Analysis
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37 --------------------
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38
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39 Fit two ordination matrices with Procrustes analysis
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40
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41 Parameters
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42 ----------
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43 reference : PCoAResults
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44 The ordination matrix to which data is fitted to.
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45 other : PCoAResults
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46 The ordination matrix that's fitted to the reference ordination.
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47 dimensions : Int % Range(1, None), optional
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48 \
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49
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50 Returns
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51 -------
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52 transformed_reference : PCoAResults
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53 A normalized version of the "reference" ordination matrix.
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54 transformed_other : PCoAResults
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55 A normalized and fitted version of the "other" ordination matrix.
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56 ]]>
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57 </help>
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58 <macros>
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59 <import>qiime_citation.xml</import>
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60 </macros>
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61 <expand macro="qiime_citation" />
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62 </tool>
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