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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-table_relative-frequency" name="qiime feature-table relative-frequency" version="2018.4">
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3 <description> - Convert to relative frequencies</description>
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4 <requirements>
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5 <requirement type="package" version="2018.4">qiime2</requirement>
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6 </requirements>
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7 <command>
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8 <![CDATA[
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9 qiime feature-table relative-frequency --i-table=$itable
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10
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11 #if str($cmdconfig) != 'None':
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12 --cmd-config=$cmdconfig
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13 #end if
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14 --o-relative-frequency-table=orelativefrequencytable;
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15
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16 cp orelativefrequencytable.qza $orelativefrequencytable;
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17 ]]>
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18 </command>
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19 <inputs>
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20 <param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency] The feature table to be converted into relative frequencies. [required]" name="itable" optional="False" type="data"/>
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21 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
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22 </inputs>
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23 <outputs>
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24 <data format="qza" label="${tool.name} on ${on_string}: relative-frequency-table.qza" name="orelativefrequencytable"/>
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25 </outputs>
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26 <help>
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27 <![CDATA[
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28 Rarefy table
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29 -------------
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30
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31 Subsample frequencies from all samples without replacement so that the sum
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32 of frequencies in each sample is equal to sampling-depth.
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33
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34 Parameters
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35 ----------
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36 table : FeatureTable[Frequency]
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37 The feature table to be rarefied.
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38 sampling_depth : Int % Range(1, None)
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39 The total frequency that each sample should be rarefied to. Samples
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40 where the sum of frequencies is less than the sampling depth will be
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41 not be included in the resulting table.
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42
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43 Returns
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44 -------
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45 rarefied_table : FeatureTable[Frequency]
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46 The resulting rarefied feature table.
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47 ]]>
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48 </help>
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49 <macros>
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50 <import>qiime_citation.xml</import>
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51 </macros>
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52 <expand macro="qiime_citation" />
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53 </tool>
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