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1 <?xml version="1.0" ?>
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2 <tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot" version="2019.4">
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3 <description> - Principal Coordinate Analysis Biplot</description>
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4 <requirements>
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5 <requirement type="package" version="2019.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime diversity pcoa-biplot
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9
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10 --i-pcoa=$ipcoa
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11 --i-features=$ifeatures
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12
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13 --o-biplot=obiplot
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14 ;
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15 cp obiplot.qza $obiplot
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16 ]]></command>
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17 <inputs>
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18 <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data"/>
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19 <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data"/>
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20 </inputs>
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21 <outputs>
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22 <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot"/>
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23 </outputs>
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24 <help><![CDATA[
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25 Principal Coordinate Analysis Biplot
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26 ####################################
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27
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28 Project features into a principal coordinates matrix. The features used
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29 should be the features used to compute the distance matrix. It is
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30 recommended that these variables be normalized in cases of dimensionally
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31 heterogeneous physical variables.
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32
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33 Parameters
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34 ----------
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35 pcoa : PCoAResults
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36 The PCoA where the features will be projected onto.
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37 features : FeatureTable[RelativeFrequency]
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38 Variables to project onto the PCoA matrix
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39
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40 Returns
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41 -------
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42 biplot : PCoAResults % Properties('biplot')
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43 The resulting PCoA matrix.
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44 ]]></help>
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45 <macros>
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46 <import>qiime_citation.xml</import>
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47 </macros>
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48 <expand macro="qiime_citation"/>
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49 </tool>
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