annotate qiime2/qiime_feature-table_transpose.xml @ 4:71f124e02000 draft default tip

Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:40:25 -0400
parents 149432539226
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
149432539226 Uploaded
florianbegusch
parents:
diff changeset
1 <?xml version="1.0" ?>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
2 <tool id="qiime_feature-table_transpose" name="qiime feature-table transpose" version="2019.4">
149432539226 Uploaded
florianbegusch
parents:
diff changeset
3 <description> - Transpose a feature table.</description>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
4 <requirements>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
5 <requirement type="package" version="2019.4">qiime2</requirement>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
6 </requirements>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
7 <command><![CDATA[
149432539226 Uploaded
florianbegusch
parents:
diff changeset
8 qiime feature-table transpose
149432539226 Uploaded
florianbegusch
parents:
diff changeset
9
149432539226 Uploaded
florianbegusch
parents:
diff changeset
10 --i-table=$itable
149432539226 Uploaded
florianbegusch
parents:
diff changeset
11
149432539226 Uploaded
florianbegusch
parents:
diff changeset
12 --o-transposed-feature-table=otransposedfeaturetable
149432539226 Uploaded
florianbegusch
parents:
diff changeset
13 ;
149432539226 Uploaded
florianbegusch
parents:
diff changeset
14 cp otransposedfeaturetable.qza $otransposedfeaturetable
149432539226 Uploaded
florianbegusch
parents:
diff changeset
15 ]]></command>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
16 <inputs>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
17 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be transposed. [required]" name="itable" optional="False" type="data"/>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
18 </inputs>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
19 <outputs>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
20 <data format="qza" label="${tool.name} on ${on_string}: transposedfeaturetable.qza" name="otransposedfeaturetable"/>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
21 </outputs>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
22 <help><![CDATA[
149432539226 Uploaded
florianbegusch
parents:
diff changeset
23 Transpose a feature table.
149432539226 Uploaded
florianbegusch
parents:
diff changeset
24 ##########################
149432539226 Uploaded
florianbegusch
parents:
diff changeset
25
149432539226 Uploaded
florianbegusch
parents:
diff changeset
26 Transpose the rows and columns (typically samples and features) of a
149432539226 Uploaded
florianbegusch
parents:
diff changeset
27 feature table.
149432539226 Uploaded
florianbegusch
parents:
diff changeset
28
149432539226 Uploaded
florianbegusch
parents:
diff changeset
29 Parameters
149432539226 Uploaded
florianbegusch
parents:
diff changeset
30 ----------
149432539226 Uploaded
florianbegusch
parents:
diff changeset
31 table : FeatureTable[Frequency]
149432539226 Uploaded
florianbegusch
parents:
diff changeset
32 The feature table to be transposed.
149432539226 Uploaded
florianbegusch
parents:
diff changeset
33
149432539226 Uploaded
florianbegusch
parents:
diff changeset
34 Returns
149432539226 Uploaded
florianbegusch
parents:
diff changeset
35 -------
149432539226 Uploaded
florianbegusch
parents:
diff changeset
36 transposed_feature_table : FeatureTable[Frequency]
149432539226 Uploaded
florianbegusch
parents:
diff changeset
37 The resulting transposed feature table.
149432539226 Uploaded
florianbegusch
parents:
diff changeset
38 ]]></help>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
39 <macros>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
40 <import>qiime_citation.xml</import>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
41 </macros>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
42 <expand macro="qiime_citation"/>
149432539226 Uploaded
florianbegusch
parents:
diff changeset
43 </tool>