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comparison qiime2/qiime_sample-classifier_summarize.xml @ 2:149432539226 draft

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author florianbegusch
date Wed, 17 Jul 2019 01:49:31 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize" version="2019.4">
3 <description> - Summarize parameter and feature extraction information for a trained estimator.</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime sample-classifier summarize
9
10 --i-sample-estimator=$isampleestimator
11
12 --o-visualization=ovisualization
13 ;
14 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'
15 && cp -r out/* '$ovisualization.files_path'
16 && mv '$ovisualization.files_path/index.html' '$ovisualization'
17 ]]></command>
18 <inputs>
19 <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data"/>
20 </inputs>
21 <outputs>
22 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
23 </outputs>
24 <help><![CDATA[
25 Summarize parameter and feature extraction information for a trained estimator.
26 ###############################################################################
27
28 Summarize parameter and feature extraction information for a trained
29 estimator.
30
31 Parameters
32 ----------
33 sample_estimator : SampleEstimator[Classifier | Regressor]
34 Sample estimator trained with fit_classifier or fit_regressor.
35
36 Returns
37 -------
38 visualization : Visualization
39 ]]></help>
40 <macros>
41 <import>qiime_citation.xml</import>
42 </macros>
43 <expand macro="qiime_citation"/>
44 </tool>