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comparison qiime2/qiime_sample-classifier_classify-samples-ncv.xml @ 4:71f124e02000 draft default tip

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:40:25 -0400
parents 149432539226
children
comparison
equal deleted inserted replaced
3:eda5df31da55 4:71f124e02000
8 qiime sample-classifier classify-samples-ncv 8 qiime sample-classifier classify-samples-ncv
9 9
10 --i-table=$itable 10 --i-table=$itable
11 --m-metadata-column="$mmetadatacolumn" 11 --m-metadata-column="$mmetadatacolumn"
12 12
13 #if $input_files_mmetadatafile: 13
14 #def list_dict_to_string(list_dict): 14
15 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 15 #if $metadatafile:
16 #for d in list_dict[1:]: 16 --m-metadata-file=$metadatafile
17 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
18 #end for
19 #return $file_list
20 #end def
21 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
22 #end if 17 #end if
23 18
24 #if $pcv: 19
20 #if str($pcv):
25 --p-cv=$pcv 21 --p-cv=$pcv
26 #end if 22 #end if
27 23
28 #if str($prandomstate): 24 #if str($prandomstate):
29 --p-random-state="$prandomstate" 25 --p-random-state="$prandomstate"
34 #if str($pnjobs): 30 #if str($pnjobs):
35 --p-n-jobs="$pnjobs" 31 --p-n-jobs="$pnjobs"
36 #end if 32 #end if
37 33
38 34
39 #if $pnestimators: 35 #if str($pnestimators):
40 --p-n-estimators=$pnestimators 36 --p-n-estimators=$pnestimators
41 #end if 37 #end if
42 38
43 #if str($pestimator) != 'None': 39 #if str($pestimator) != 'None':
44 --p-estimator=$pestimator 40 --p-estimator=$pestimator
79 <option selected="True" value="None">Selection is Optional</option> 75 <option selected="True" value="None">Selection is Optional</option>
80 <option value="error">error</option> 76 <option value="error">error</option>
81 <option value="ignore">ignore</option> 77 <option value="ignore">ignore</option>
82 </param> 78 </param>
83 79
84 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 80 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" />
85 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> 81
86 </repeat>
87 </inputs> 82 </inputs>
88 <outputs> 83 <outputs>
89 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/> 84 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/>
90 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> 85 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/>
91 </outputs> 86 </outputs>