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comparison qiime2/qiime_sample-classifier_classify-samples.xml @ 4:71f124e02000 draft default tip

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:40:25 -0400
parents 149432539226
children
comparison
equal deleted inserted replaced
3:eda5df31da55 4:71f124e02000
8 qiime sample-classifier classify-samples 8 qiime sample-classifier classify-samples
9 9
10 --i-table=$itable 10 --i-table=$itable
11 --m-metadata-column="$mmetadatacolumn" 11 --m-metadata-column="$mmetadatacolumn"
12 12
13 #if $ptestsize: 13 #if str($ptestsize):
14 --p-test-size=$ptestsize 14 --p-test-size=$ptestsize
15 #end if 15 #end if
16 16
17 #if $pstep: 17 #if str($pstep):
18 --p-step=$pstep 18 --p-step=$pstep
19 #end if 19 #end if
20 20
21 #if $pcv: 21 #if str($pcv):
22 --p-cv=$pcv 22 --p-cv=$pcv
23 #end if 23 #end if
24 24
25 #if str($prandomstate): 25 #if str($prandomstate):
26 --p-random-state="$prandomstate" 26 --p-random-state="$prandomstate"
56 #if str($pmissingsamples) != 'None': 56 #if str($pmissingsamples) != 'None':
57 --p-missing-samples=$pmissingsamples 57 --p-missing-samples=$pmissingsamples
58 #end if 58 #end if
59 59
60 60
61 #if $input_files_mmetadatafile: 61 #if $metadatafile:
62 #def list_dict_to_string(list_dict): 62 --m-metadata-file=$metadatafile
63 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 63 #end if
64 #for d in list_dict[1:]: 64
65 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
66 #end for
67 #return $file_list
68 #end def
69 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
70 #end if
71 65
72 66
73 --o-sample-estimator=osampleestimator 67 --o-sample-estimator=osampleestimator
74 --o-feature-importance=ofeatureimportance 68 --o-feature-importance=ofeatureimportance
75 --o-predictions=opredictions 69 --o-predictions=opredictions
143 <option selected="True" value="None">Selection is Optional</option> 137 <option selected="True" value="None">Selection is Optional</option>
144 <option value="error">error</option> 138 <option value="error">error</option>
145 <option value="ignore">ignore</option> 139 <option value="ignore">ignore</option>
146 </param> 140 </param>
147 141
148 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 142 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" />
149 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
150 </repeat>
151 143
152 </inputs> 144 </inputs>
153 <outputs> 145 <outputs>
154 <data format="qza" label="${tool.name} on ${on_string}: sampleestimator.qza" name="osampleestimator"/> 146 <data format="qza" label="${tool.name} on ${on_string}: sampleestimator.qza" name="osampleestimator"/>
155 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> 147 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/>