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comparison qiime2/qiime_sample-classifier_fit-regressor.xml @ 4:71f124e02000 draft default tip

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:40:25 -0400
parents 149432539226
children
comparison
equal deleted inserted replaced
3:eda5df31da55 4:71f124e02000
8 qiime sample-classifier fit-regressor 8 qiime sample-classifier fit-regressor
9 9
10 --i-table=$itable 10 --i-table=$itable
11 --m-metadata-column="$mmetadatacolumn" 11 --m-metadata-column="$mmetadatacolumn"
12 12
13 #if $pstep: 13 #if str($pstep):
14 --p-step=$pstep 14 --p-step=$pstep
15 #end if 15 #end if
16 16
17 #if $pcv: 17 #if str($pcv):
18 --p-cv=$pcv 18 --p-cv=$pcv
19 #end if 19 #end if
20 20
21 #if str($prandomstate): 21 #if str($prandomstate):
22 --p-random-state="$prandomstate" 22 --p-random-state="$prandomstate"
26 #if str($pnjobs): 26 #if str($pnjobs):
27 --p-n-jobs="$pnjobs" 27 --p-n-jobs="$pnjobs"
28 #end if 28 #end if
29 29
30 30
31 #if $pnestimators: 31 #if str($pnestimators):
32 --p-n-estimators=$pnestimators 32 --p-n-estimators=$pnestimators
33 #end if 33 #end if
34 34
35 #if str($pestimator) != 'None': 35 #if str($pestimator) != 'None':
36 --p-estimator=$pestimator 36 --p-estimator=$pestimator
47 #if str($pmissingsamples) != 'None': 47 #if str($pmissingsamples) != 'None':
48 --p-missing-samples=$pmissingsamples 48 --p-missing-samples=$pmissingsamples
49 #end if 49 #end if
50 50
51 51
52 #if $input_files_mmetadatafile: 52
53 #def list_dict_to_string(list_dict): 53
54 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 54 #if $metadatafile:
55 #for d in list_dict[1:]: 55 --m-metadata-file=$metadatafile
56 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
57 #end for
58 #return $file_list
59 #end def
60 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
61 #end if 56 #end if
57
62 58
63 59
64 --o-sample-estimator=osampleestimator 60 --o-sample-estimator=osampleestimator
65 --o-feature-importance=ofeatureimportance 61 --o-feature-importance=ofeatureimportance
66 ; 62 ;
93 <option selected="True" value="None">Selection is Optional</option> 89 <option selected="True" value="None">Selection is Optional</option>
94 <option value="error">error</option> 90 <option value="error">error</option>
95 <option value="ignore">ignore</option> 91 <option value="ignore">ignore</option>
96 </param> 92 </param>
97 93
98 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 94 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" />
99 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
100 </repeat>
101 95
102 </inputs> 96 </inputs>
103 <outputs> 97 <outputs>
104 <data format="qza" label="${tool.name} on ${on_string}: sampleestimator.qza" name="osampleestimator"/> 98 <data format="qza" label="${tool.name} on ${on_string}: sampleestimator.qza" name="osampleestimator"/>
105 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> 99 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/>