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comparison qiime2/qiime_sample-classifier_regress-samples-ncv.xml @ 4:71f124e02000 draft default tip

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:40:25 -0400
parents 149432539226
children
comparison
equal deleted inserted replaced
3:eda5df31da55 4:71f124e02000
8 qiime sample-classifier regress-samples-ncv 8 qiime sample-classifier regress-samples-ncv
9 9
10 --i-table=$itable 10 --i-table=$itable
11 --m-metadata-column="$mmetadatacolumn" 11 --m-metadata-column="$mmetadatacolumn"
12 12
13 #if $pcv: 13 #if str($pcv):
14 --p-cv=$pcv 14 --p-cv=$pcv
15 #end if 15 #end if
16 16
17 #if str($prandomstate): 17 #if str($prandomstate):
18 --p-random-state="$prandomstate" 18 --p-random-state="$prandomstate"
23 #if str($pnjobs): 23 #if str($pnjobs):
24 --p-n-jobs="$pnjobs" 24 --p-n-jobs="$pnjobs"
25 #end if 25 #end if
26 26
27 27
28 #if $pnestimators: 28 #if str($pnestimators):
29 --p-n-estimators=$pnestimators 29 --p-n-estimators=$pnestimators
30 #end if 30 #end if
31 31
32 #if str($pestimator) != 'None': 32 #if str($pestimator) != 'None':
33 --p-estimator=$pestimator 33 --p-estimator=$pestimator
44 #if str($pmissingsamples) != 'None': 44 #if str($pmissingsamples) != 'None':
45 --p-missing-samples=$pmissingsamples 45 --p-missing-samples=$pmissingsamples
46 #end if 46 #end if
47 47
48 48
49 #if $input_files_mmetadatafile: 49
50 #def list_dict_to_string(list_dict): 50 #if $metadatafile:
51 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 51 --m-metadata-file=$metadatafile
52 #for d in list_dict[1:]:
53 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
54 #end for
55 #return $file_list
56 #end def
57 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
58 #end if 52 #end if
53
59 54
60 55
61 --o-predictions=opredictions 56 --o-predictions=opredictions
62 --o-feature-importance=ofeatureimportance 57 --o-feature-importance=ofeatureimportance
63 ; 58 ;
89 <option selected="True" value="None">Selection is Optional</option> 84 <option selected="True" value="None">Selection is Optional</option>
90 <option value="error">error</option> 85 <option value="error">error</option>
91 <option value="ignore">ignore</option> 86 <option value="ignore">ignore</option>
92 </param> 87 </param>
93 88
94 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 89
95 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> 90 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" />
96 </repeat> 91
97 </inputs> 92 </inputs>
98 <outputs> 93 <outputs>
99 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/> 94 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/>
100 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> 95 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/>
101 </outputs> 96 </outputs>