--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_diversity_beta.xml	Thu May 24 05:21:07 2018 -0400
@@ -0,0 +1,81 @@
+<?xml version="1.0" ?>
+<tool id="qiime_diversity_beta" name="qiime diversity beta" version="2018.4">
+	<description> - Beta diversity</description>
+	<requirements>
+		<requirement type="package" version="2018.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+  qiime diversity beta --i-table=$itable --p-metric=$pmetric --o-distance-matrix=odistancematrix
+  
+  #if str($cmdconfig) != 'None':
+   --cmd-config=$cmdconfig
+  #end if
+  
+  #set $pnjobs = '${GALAXY_SLOTS:-4}'
+  
+  #if str($pnjobs):
+   --p-n-jobs="$pnjobs"
+  #end if
+  
+  ;
+  cp odistancematrix.qza $odistancematrix;
+  ]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency] The feature table containing the samples over which beta diversity should be computed.  [required]" name="itable" optional="False" type="data"/>
+
+		<param label="--p-metric:  The beta diversity metric to be computed.
+                                  [required]" name="pmetric" optional="False" type="select" >
+			<option value="hamming">hamming</option>
+			<option value="sqeuclidean">sqeuclidean</option>
+			<option value="cityblock">cityblock</option>
+			<option value="sokalmichener">sokalmichener</option>
+			<option value="braycurtis">braycurtis</option>
+			<option value="cosine">cosine</option>
+			<option value="euclidean">euclidean</option>
+			<option value="rogerstanimoto">rogerstanimoto</option>
+			<option value="canberra">canberra</option>
+			<option value="seuclidean">seuclidean</option>
+			<option value="correlation">correlation</option>
+			<option value="sokalsneath">sokalsneath</option>
+			<option value="chebyshev">chebyshev</option>
+			<option value="mahalanobis">mahalanobis</option>
+			<option value="matching">matching</option>
+			<option value="kulsinski">kulsinski</option>
+			<option value="yule">yule</option>
+			<option value="dice">dice</option>
+			<option value="russellrao">russellrao</option>
+			<option value="wminkowski">wminkowski</option>
+			<option value="jaccard">jaccard</option>
+		</param>
+		
+		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: distance-matrix.qza" name="odistancematrix"/>
+	</outputs>
+	<help><![CDATA[
+Beta diversity
+--------------
+
+Computes a user-specified beta diversity metric for all pairs of samples in
+a feature table.
+
+Parameters
+----------
+table : FeatureTable[Frequency]
+    The feature table containing the samples over which beta diversity
+    should be computed.
+metric : Str % Choices({'braycurtis', 'canberra', 'chebyshev', 'cityblock', 'correlation', 'cosine', 'dice', 'euclidean', 'hamming', 'jaccard', 'kulsinski', 'mahalanobis', 'matching', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'wminkowski', 'yule'})
+    The beta diversity metric to be computed.
+
+Returns
+-------
+distance_matrix : DistanceMatrix
+    The resulting distance matrix.
+    ]]>
+	</help>
+<macros>
+	<import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation" />
+</tool>