Mercurial > repos > florianbegusch > qiime2_wrappers
diff qiime2/qiime_gneiss_correlation-clustering.xml @ 0:51b9b6b57732 draft
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author | florianbegusch |
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date | Thu, 24 May 2018 05:21:07 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_gneiss_correlation-clustering.xml Thu May 24 05:21:07 2018 -0400 @@ -0,0 +1,54 @@ +<?xml version="1.0" ?> +<tool id="qiime_gneiss_correlation-clustering" name="qiime gneiss correlation-clustering" version="2018.4"> + <description> - Hierarchical clustering using feature correlation.</description> + <requirements> + <requirement type="package" version="2018.4">qiime2</requirement> + </requirements> + <command> + <![CDATA[ + qiime gneiss correlation-clustering --i-table=$itable + + #if str($cmdconfig) != 'None': + --cmd-config=$cmdconfig + #end if + --o-clustering=oclustering; + + cp oclustering.qza $oclustering; + ]]> + </command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Composition] The feature table containing the samples in which the columns will be clustered. [required]" name="itable" optional="False" type="data"/> + <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/> + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: clustering.qza" name="oclustering"/> + </outputs> + <help> + <![CDATA[ +Hierarchical clustering using feature correlation. +--------------------------------------------------- + +Build a bifurcating tree that represents a hierarchical clustering of +features. The hiearchical clustering uses Ward hierarchical clustering +based on the degree of proportionality between features. + +Parameters +---------- +table : FeatureTable[Composition] + The feature table containing the samples in which the columns will be + clustered. + +Returns +------- +clustering : Hierarchy + A hierarchy of feature identifiers where each tipcorresponds to the + feature identifiers in the table. This tree can contain tip ids that + are not present in the table, but all feature ids in the table must be + present in this tree. + ]]> + </help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation" /> +</tool>