Mercurial > repos > florianbegusch > qiime2_wrappers

diff qiime2/merge_feature_table_and_taxonomy.xml @ 4:71f124e02000 draft default tip

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:40:25 -0400
parents 149432539226
children
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--- a/qiime2/merge_feature_table_and_taxonomy.xml	Wed Jul 17 01:53:11 2019 -0400
+++ b/qiime2/merge_feature_table_and_taxonomy.xml	Tue Aug 13 07:40:25 2019 -0400
@@ -7,8 +7,8 @@
 	<command>
 mkdir out;
 
-qiime tools export --input-path --output-path out $taxonomy_qza;
-qiime tools export --input-path --output-path out $biom_qza;
+qiime tools export --input-path $taxonomy_qza --output-path out;
+qiime tools export --input-path $biom_qza --output-path out;
 
 sed -i '1s;^;#;' out/*.tsv;
 sed -i 's/Confidence/confidence/g' out/*.tsv;