Mercurial > repos > florianbegusch > qiime2_wrappers
diff qiime2/qiime_demux_emp-single.xml @ 4:71f124e02000 draft default tip
Fixes
author | florianbegusch |
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date | Tue, 13 Aug 2019 07:40:25 -0400 |
parents | 149432539226 |
children |
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--- a/qiime2/qiime_demux_emp-single.xml Wed Jul 17 01:53:11 2019 -0400 +++ b/qiime2/qiime_demux_emp-single.xml Tue Aug 13 07:40:25 2019 -0400 @@ -11,6 +11,7 @@ --m-barcodes-column="$mbarcodescolumn" +#if $input_files_mbarcodesfile: #def list_dict_to_string(list_dict): #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') #for d in list_dict[1:]: @@ -18,8 +19,8 @@ #end for #return $file_list #end def - --m-barcodes-file=$list_dict_to_string($input_files_mbarcodesfile) +#end if #if $pnogolayerrorcorrection: @@ -41,8 +42,8 @@ cp oerrorcorrectiondetails.qza $oerrorcorrectiondetails ]]></command> <inputs> - <repeat name="input_files_mbarcodesfile" optional="False" title="--m-barcodes-file"> - <param label="--m-barcodes-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip"/> + <repeat name="input_files_mbarcodesfile" optional="True" title="--m-barcodes-file [optional]"> + <param label="--m-barcodes-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip"/> </repeat> <param format="qza,no_unzip.zip" label="--i-seqs: ARTIFACT RawSequences | EMPSingleEndSequences | EMPPairedEndSequences The single-end sequences to be demultiplexed. [required]" name="iseqs" optional="False" type="data"/>