Mercurial > repos > florianbegusch > qiime2_wrappers
diff qiime2/qiime_gneiss_add-pseudocount.xml @ 4:71f124e02000 draft default tip
Fixes
author | florianbegusch |
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date | Tue, 13 Aug 2019 07:40:25 -0400 |
parents | eda5df31da55 |
children |
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--- a/qiime2/qiime_gneiss_add-pseudocount.xml Wed Jul 17 01:53:11 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,55 +0,0 @@ -<?xml version="1.0" ?> -<tool id="qiime_gneiss_add-pseudocount" name="qiime gneiss add-pseudocount" version="2018.4"> - <description> - Add pseudocount to table</description> - <requirements> - <requirement type="package" version="2018.4">qiime2</requirement> - </requirements> - <command> - <![CDATA[ - qiime gneiss add-pseudocount --i-table=$itable - - #if $ppseudocount: - --p-pseudocount=$ppseudocount - #end if - - #if str($cmdconfig) != 'None': - --cmd-config=$cmdconfig - #end if - --o-composition-table=ocompositiontable; - - cp ocompositiontable.qza $ocompositiontable - ]]> - </command> - <inputs> - <param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency] The feature table to which pseudocounts should be added. [required]" name="itable" optional="False" type="data"/> - <param label="--p-pseudocount: The value to add to all counts in the feature table. [default: 1]" name="ppseudocount" optional="True" type="integer" value="1"/> - <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/> - </inputs> - <outputs> - <data format="qza" label="${tool.name} on ${on_string}: composition-table.qza" name="ocompositiontable"/> - </outputs> - <help> - <![CDATA[ -Add pseudocount to table -------------------------- - -Increment all counts in table by pseudocount. - -Parameters ----------- -table : FeatureTable[Frequency] - The feature table to which pseudocounts should be added. -pseudocount : Int, optional - The value to add to all counts in the feature table. - -Returns -------- -composition_table : FeatureTable[Composition] - The resulting feature table. - ]]> - </help> -<macros> - <import>qiime_citation.xml</import> -</macros> -<expand macro="qiime_citation" /> -</tool>