diff qiime2/qiime_gneiss_add-pseudocount.xml @ 4:71f124e02000 draft default tip

Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:40:25 -0400
parents eda5df31da55
children
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line diff
--- a/qiime2/qiime_gneiss_add-pseudocount.xml	Wed Jul 17 01:53:11 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-<?xml version="1.0" ?>
-<tool id="qiime_gneiss_add-pseudocount" name="qiime gneiss add-pseudocount" version="2018.4">
-	<description> - Add pseudocount to table</description>
-	<requirements>
-		<requirement type="package" version="2018.4">qiime2</requirement>
-	</requirements>
-	<command>
-	<![CDATA[
-	qiime gneiss add-pseudocount --i-table=$itable
-
-	#if $ppseudocount:
-	 --p-pseudocount=$ppseudocount
-	#end if
-
-	#if str($cmdconfig) != 'None':
-	 --cmd-config=$cmdconfig
-	#end if
-	 --o-composition-table=ocompositiontable;
-
- cp ocompositiontable.qza $ocompositiontable
-	]]>
-	</command>
-	<inputs>
-		<param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency] The feature table to which pseudocounts should be added.  [required]" name="itable" optional="False" type="data"/>
-		<param label="--p-pseudocount: The value to add to all counts in the feature table.  [default: 1]" name="ppseudocount" optional="True" type="integer" value="1"/>
-		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
-	</inputs>
-	<outputs>
-		<data format="qza" label="${tool.name} on ${on_string}: composition-table.qza" name="ocompositiontable"/>
-	</outputs>
-	<help>
-		<![CDATA[
-Add pseudocount to table
--------------------------
-
-Increment all counts in table by pseudocount.
-
-Parameters
-----------
-table : FeatureTable[Frequency]
-    The feature table to which pseudocounts should be added.
-pseudocount : Int, optional
-    The value to add to all counts in the feature table.
-
-Returns
--------
-composition_table : FeatureTable[Composition]
-    The resulting feature table.
-		]]>
-	</help>
-<macros>
-	<import>qiime_citation.xml</import>
-</macros>
-<expand macro="qiime_citation" />
-</tool>