Mercurial > repos > florianbegusch > qiime2_wrappers
diff qiime2/qiime_quality-control_evaluate-composition.xml @ 4:71f124e02000 draft default tip
Fixes
author | florianbegusch |
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date | Tue, 13 Aug 2019 07:40:25 -0400 |
parents | 149432539226 |
children |
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--- a/qiime2/qiime_quality-control_evaluate-composition.xml Wed Jul 17 01:53:11 2019 -0400 +++ b/qiime2/qiime_quality-control_evaluate-composition.xml Tue Aug 13 07:40:25 2019 -0400 @@ -10,19 +10,13 @@ --i-expected-features=$iexpectedfeatures --i-observed-features=$iobservedfeatures -#if $input_files_mmetadatafile: -#def list_dict_to_string(list_dict): - #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') - #for d in list_dict[1:]: - #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') - #end for - #return $file_list -#end def - --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) + +#if $metadatafile: + --m-metadata-file=$metadatafile #end if -#if $pdepth: +#if str($pdepth): --p-depth=$pdepth #end if @@ -58,8 +52,8 @@ --p-plot-observed-features #end if -#if $pplotobservedfeaturesratio: - --p-plot-observed-features-ratio +#if $pnoplotobservedfeaturesratio: + --p-no-plot-observed-features-ratio #end if #if str($mmetadatacolumn): @@ -107,9 +101,8 @@ <param label="--p-no-plot-observed-features-ratio: Do not plot ratio of observed:expected features on score plot. [default: False]" name="pnoplotobservedfeaturesratio" selected="False" type="boolean"/> <param label="--m-metadata-column: COLUMN MetadataColumn[Categorical] Optional sample metadata that maps observed-features sample IDs to expected-features sample IDs. [optional]" name="mmetadatacolumn" optional="True" type="text"/> - <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> - <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> - </repeat> + <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" /> + </inputs> <outputs>