Mercurial > repos > florianbegusch > qiime2_wrappers
diff qiime2/qiime_quality-control_exclude-seqs.xml @ 4:71f124e02000 draft default tip
Fixes
author | florianbegusch |
---|---|
date | Tue, 13 Aug 2019 07:40:25 -0400 |
parents | 149432539226 |
children |
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--- a/qiime2/qiime_quality-control_exclude-seqs.xml Wed Jul 17 01:53:11 2019 -0400 +++ b/qiime2/qiime_quality-control_exclude-seqs.xml Tue Aug 13 07:40:25 2019 -0400 @@ -14,7 +14,7 @@ --p-method=$pmethod #end if -#if $ppercidentity: +#if str($ppercidentity): --p-perc-identity=$ppercidentity #end if @@ -22,7 +22,7 @@ --p-evalue="$pevalue" #end if -#if $ppercqueryaligned: +#if str($ppercqueryaligned): --p-perc-query-aligned=$ppercqueryaligned #end if @@ -47,7 +47,7 @@ <option value="blastn-short">blastn-short</option> </param> <param label="--p-perc-identity: PROPORTION Range(0.0, 1.0, inclusive_end=True) Reject match if percent identity to reference is lower. Must be in range [0.0, 1.0] [default: 0.97]" name="ppercidentity" optional="True" type="float" value="0.97" min="0" max="1" exclusive_end="False"/> - <param label="--p-evalue: NUMBER BLAST expectation (E) value threshold for saving hits. Reject if E value is higher than threshold. This threshold is disabled by default. [optional]" name="pevalue" optional="True" type="text"/> + <param label="--p-evalue: NUMBER BLAST expectation (E) value threshold for saving hits. Reject if E value is higher than threshold. This threshold is disabled by default. [optional]" name="pevalue" optional="True" type="float"/> <param label="--p-perc-query-aligned: NUMBER Percent of query sequence that must align to reference in order to be accepted as a hit. [default: 0.97]" name="ppercqueryaligned" optional="True" type="float" value="0.97"/> </inputs> <outputs>