<?xml version="1.0" ?>
<tool id="qiime_composition_add-pseudocount" name="qiime composition add-pseudocount" version="2018.2">
	<description> - Add pseudocount to table</description>
	<requirements>
		<requirement type="package" version="2018.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
  
  qiime composition add-pseudocount --i-table=$itable
  
  #if $ppseudocount:
   --p-pseudocount=$ppseudocount
  #end if

  #if str($cmdconfig) != 'None':
   --cmd-config=$cmdconfig
  #end if
  
  --o-composition-table=ocompositiontable
  ;
  cp ocompositiontable.qza $ocompositiontable

]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency] - The feature table to which pseudocounts should be added.  [required]" name="itable" optional="False" type="data"/>
		<param label="--p-pseudocount: The value to add to all counts in the feature table.  [default: 1]" name="ppseudocount" optional="True" type="integer" value="1"/>
		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: compositiontable.qza" name="ocompositiontable"/>
	</outputs>
	<help><![CDATA[
Add pseudocount to table
------------------------

Increment all counts in table by pseudocount.

Parameters
----------
table : FeatureTable[Frequency]
    The feature table to which pseudocounts should be added.
pseudocount : Int, optional
    The value to add to all counts in the feature table.

Returns
-------
composition_table : FeatureTable[Composition]
    The resulting feature table.
 ]]>
</help>
<macros>
	<import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation" />
</tool>