# HG changeset patch # User fmercuri # Date 1624875896 0 # Node ID 6944c73fe6f9d8e71bbdeb312eb0f4743017d3dd # Parent c549135d400ba93acf71d1d3264000b3d74b3043 Uploaded diff -r c549135d400b -r 6944c73fe6f9 nvt.xml --- a/nvt.xml Mon Jun 28 10:17:49 2021 +0000 +++ b/nvt.xml Mon Jun 28 10:24:56 2021 +0000 @@ -18,7 +18,7 @@ ln -s '$top_input' ./top_input.top && ln -s '$itp_input' ./posres.itp && - gmx grompp -f ./nvt.mdp -c ./em.gro -r ./em.gro -p ./top_input.top -o nvt.tpr &>> verbose.txt && + gmx grompp -f ./nvt.mdp -c ./em.gro -r ./em.gro -p ./top_input.top -o nvt.tpr -maxwarn 4 &>> verbose.txt && gmx mdrun -deffnm nvt &>> verbose.txt #if $str == 'pdb' or $str == 'both'