Mercurial > repos > frogs > frogs_2_0_0
comparison test-data/bergeyTrainingTree.xml @ 0:76c750c5f0d1 draft default tip
planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
| author | frogs |
|---|---|
| date | Thu, 25 Oct 2018 05:01:13 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:76c750c5f0d1 |
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| 1 <trainsetNo>1</trainsetNo><version>null</version><modversion>null</modversion><file>bergeyTrainingTree</file> | |
| 2 <TreeNode name="Root" taxid="0" rank="rootrank" parentTaxid="-1" leaveCount="30" genusIndex="-1"></TreeNode> | |
| 3 <TreeNode name="Bacteria [id:3]" taxid="3" rank="domain" parentTaxid="0" leaveCount="30" genusIndex="-1"></TreeNode> | |
| 4 <TreeNode name="Actinobacteria [id:400]" taxid="400" rank="phylum" parentTaxid="3" leaveCount="30" genusIndex="-1"></TreeNode> | |
| 5 <TreeNode name="Acidimicrobiia [id:401]" taxid="401" rank="class" parentTaxid="400" leaveCount="30" genusIndex="-1"></TreeNode> | |
| 6 <TreeNode name="Acidimicrobiales [id:402]" taxid="402" rank="order" parentTaxid="401" leaveCount="30" genusIndex="-1"></TreeNode> | |
| 7 <TreeNode name="Sva0996 marine group [id:417]" taxid="417" rank="family" parentTaxid="402" leaveCount="1" genusIndex="-1"></TreeNode> | |
| 8 <TreeNode name="unknown genus [id:1000000001]" taxid="1000000001" rank="genus" parentTaxid="417" leaveCount="1" genusIndex="-1"></TreeNode> | |
| 9 <TreeNode name="unidentified bacterium wb1_P06 [id:1000000043]" taxid="1000000043" rank="species" parentTaxid="1000000001" leaveCount="1" genusIndex="0"></TreeNode> | |
| 10 <TreeNode name="OM1 clade [id:415]" taxid="415" rank="family" parentTaxid="402" leaveCount="7" genusIndex="-1"></TreeNode> | |
| 11 <TreeNode name="Candidatus Actinomarina [id:416]" taxid="416" rank="genus" parentTaxid="415" leaveCount="2" genusIndex="-1"></TreeNode> | |
| 12 <TreeNode name="unknown species [id:1000000003]" taxid="1000000003" rank="species" parentTaxid="416" leaveCount="1" genusIndex="1"></TreeNode> | |
| 13 <TreeNode name="Candidatus Actinomarina minuta [id:1000000059]" taxid="1000000059" rank="species" parentTaxid="416" leaveCount="1" genusIndex="2"></TreeNode> | |
| 14 <TreeNode name="unknown genus [id:1000000008]" taxid="1000000008" rank="genus" parentTaxid="415" leaveCount="5" genusIndex="-1"></TreeNode> | |
| 15 <TreeNode name="microbial mat metagenome [id:1000000034]" taxid="1000000034" rank="species" parentTaxid="1000000008" leaveCount="1" genusIndex="3"></TreeNode> | |
| 16 <TreeNode name="bacterium WH6-7 [id:1000000011]" taxid="1000000011" rank="species" parentTaxid="1000000008" leaveCount="1" genusIndex="4"></TreeNode> | |
| 17 <TreeNode name="unidentified bacterium wb1_G04 [id:1000000041]" taxid="1000000041" rank="species" parentTaxid="1000000008" leaveCount="1" genusIndex="5"></TreeNode> | |
| 18 <TreeNode name="unidentified bacterium wb1_J07 [id:1000000044]" taxid="1000000044" rank="species" parentTaxid="1000000008" leaveCount="1" genusIndex="6"></TreeNode> | |
| 19 <TreeNode name="unknown species [id:1000000009]" taxid="1000000009" rank="species" parentTaxid="1000000008" leaveCount="1" genusIndex="7"></TreeNode> | |
| 20 <TreeNode name="Acidimicrobiaceae [id:403]" taxid="403" rank="family" parentTaxid="402" leaveCount="12" genusIndex="-1"></TreeNode> | |
| 21 <TreeNode name="CL500-29 marine group [id:405]" taxid="405" rank="genus" parentTaxid="403" leaveCount="4" genusIndex="-1"></TreeNode> | |
| 22 <TreeNode name="bacterium enrichment culture clone B213(2011) [id:1000000054]" taxid="1000000054" rank="species" parentTaxid="405" leaveCount="1" genusIndex="8"></TreeNode> | |
| 23 <TreeNode name="bacterium enrichment culture clone B97(2011) [id:1000000056]" taxid="1000000056" rank="species" parentTaxid="405" leaveCount="1" genusIndex="9"></TreeNode> | |
| 24 <TreeNode name="unknown species [id:1000000000]" taxid="1000000000" rank="species" parentTaxid="405" leaveCount="1" genusIndex="10"></TreeNode> | |
| 25 <TreeNode name="marine metagenome [id:1000000048]" taxid="1000000048" rank="species" parentTaxid="405" leaveCount="1" genusIndex="11"></TreeNode> | |
| 26 <TreeNode name="Acidimicrobium [id:404]" taxid="404" rank="genus" parentTaxid="403" leaveCount="1" genusIndex="-1"></TreeNode> | |
| 27 <TreeNode name="unknown species [id:1000000047]" taxid="1000000047" rank="species" parentTaxid="404" leaveCount="1" genusIndex="12"></TreeNode> | |
| 28 <TreeNode name="Ferrithrix [id:407]" taxid="407" rank="genus" parentTaxid="403" leaveCount="3" genusIndex="-1"></TreeNode> | |
| 29 <TreeNode name="actinobacterium BGR 74 [id:1000000024]" taxid="1000000024" rank="species" parentTaxid="407" leaveCount="1" genusIndex="13"></TreeNode> | |
| 30 <TreeNode name="unknown species [id:1000000006]" taxid="1000000006" rank="species" parentTaxid="407" leaveCount="1" genusIndex="14"></TreeNode> | |
| 31 <TreeNode name="actinobacterium BGR 77 [id:1000000021]" taxid="1000000021" rank="species" parentTaxid="407" leaveCount="1" genusIndex="15"></TreeNode> | |
| 32 <TreeNode name="Ferrimicrobium [id:406]" taxid="406" rank="genus" parentTaxid="403" leaveCount="2" genusIndex="-1"></TreeNode> | |
| 33 <TreeNode name="Ferrimicrobium acidiphilum [id:1000000050]" taxid="1000000050" rank="species" parentTaxid="406" leaveCount="1" genusIndex="16"></TreeNode> | |
| 34 <TreeNode name="unknown species [id:1000000007]" taxid="1000000007" rank="species" parentTaxid="406" leaveCount="1" genusIndex="17"></TreeNode> | |
| 35 <TreeNode name="unknown genus [id:409]" taxid="409" rank="genus" parentTaxid="403" leaveCount="2" genusIndex="-1"></TreeNode> | |
| 36 <TreeNode name="unknown species [id:1000000027]" taxid="1000000027" rank="species" parentTaxid="409" leaveCount="1" genusIndex="18"></TreeNode> | |
| 37 <TreeNode name="Ilumatobacter nonamiensis YM16-303 [id:1000000014]" taxid="1000000014" rank="species" parentTaxid="409" leaveCount="1" genusIndex="19"></TreeNode> | |
| 38 <TreeNode name="Acidimicrobiales Incertae Sedis [id:410]" taxid="410" rank="family" parentTaxid="402" leaveCount="2" genusIndex="-1"></TreeNode> | |
| 39 <TreeNode name="Aciditerrimonas [id:411]" taxid="411" rank="genus" parentTaxid="410" leaveCount="2" genusIndex="-1"></TreeNode> | |
| 40 <TreeNode name="Aciditerrimonas ferrireducens [id:1000000012]" taxid="1000000012" rank="species" parentTaxid="411" leaveCount="1" genusIndex="20"></TreeNode> | |
| 41 <TreeNode name="unknown species [id:1000000042]" taxid="1000000042" rank="species" parentTaxid="411" leaveCount="1" genusIndex="21"></TreeNode> | |
| 42 <TreeNode name="unknown family [id:418]" taxid="418" rank="family" parentTaxid="402" leaveCount="5" genusIndex="-1"></TreeNode> | |
| 43 <TreeNode name="unknown genus [id:1000000004]" taxid="1000000004" rank="genus" parentTaxid="418" leaveCount="5" genusIndex="-1"></TreeNode> | |
| 44 <TreeNode name="bacterium enrichment culture clone auto73_4W [id:1000000051]" taxid="1000000051" rank="species" parentTaxid="1000000004" leaveCount="1" genusIndex="22"></TreeNode> | |
| 45 <TreeNode name="bacterium enrichment culture clone auto8_4W [id:1000000053]" taxid="1000000053" rank="species" parentTaxid="1000000004" leaveCount="1" genusIndex="23"></TreeNode> | |
| 46 <TreeNode name="actinobacterium YJF2-33 [id:1000000026]" taxid="1000000026" rank="species" parentTaxid="1000000004" leaveCount="1" genusIndex="24"></TreeNode> | |
| 47 <TreeNode name="actinobacterium BGR 43 [id:1000000022]" taxid="1000000022" rank="species" parentTaxid="1000000004" leaveCount="1" genusIndex="25"></TreeNode> | |
| 48 <TreeNode name="unknown species [id:1000000005]" taxid="1000000005" rank="species" parentTaxid="1000000004" leaveCount="1" genusIndex="26"></TreeNode> | |
| 49 <TreeNode name="Iamiaceae [id:413]" taxid="413" rank="family" parentTaxid="402" leaveCount="3" genusIndex="-1"></TreeNode> | |
| 50 <TreeNode name="Iamia [id:414]" taxid="414" rank="genus" parentTaxid="413" leaveCount="3" genusIndex="-1"></TreeNode> | |
| 51 <TreeNode name="bacterium Ellin5273 [id:1000000038]" taxid="1000000038" rank="species" parentTaxid="414" leaveCount="1" genusIndex="27"></TreeNode> | |
| 52 <TreeNode name="Iamia majanohamensis [id:1000000016]" taxid="1000000016" rank="species" parentTaxid="414" leaveCount="1" genusIndex="28"></TreeNode> | |
| 53 <TreeNode name="bacterium Ellin5247 [id:1000000037]" taxid="1000000037" rank="species" parentTaxid="414" leaveCount="1" genusIndex="29"></TreeNode> |