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comparison test-data/databases/HVL_db.loc @ 0:59bc96331073 draft default tip

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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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1 # Copyright (C) 2014 INRA
2 #
3 # This program is free software: you can redistribute it and/or modify
4 # it under the terms of the GNU General Public License as published by
5 # the Free Software Foundation, either version 3 of the License, or
6 # (at your option) any later version.
7 #
8 # This program is distributed in the hope that it will be useful,
9 # but WITHOUT ANY WARRANTY; without even the implied warranty of
10 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
11 # GNU General Public License for more details.
12 #
13 # You should have received a copy of the GNU General Public License
14 # along with this program. If not, see <http://www.gnu.org/licenses/>.
15 #
16 #
17 #This is a sample file that enables tools FROGS_affiliations_postprocess to solve
18 #inclusive amplicon sequence by selecting the smallest reference among multihit
19 #You will need to create or download exact amplicon sequence reference fasta file
20 #download link : http://genoweb.toulouse.inra.fr/frogs_databanks/HVL_reference
21 #Finally you will need to create HVL_db.loc file similar to this one in your galaxy
22 #tool-data directory.The HVL_db.loc file has this format (longer white space characters are
23 #TAB characters):
24 #
25 #<unique_database_name> <name> <file_path>
26 #
27 #First column will be the visible name in galaxy.
28 #So, for example, if you have UNITE 7.1 ITS1 (only!) stored
29 #in /galaxy_databanks/ITS/UNITE_7.1/UNITE_ITS1.fasta
30 #then the HVL_db.loc entry would look like this:
31 #
32 #
33 # EXAMPLE FOR TEST :
34 Unite_extract_ITS1_test Unite_extract_ITS1_test ${__HERE__}/HVL_db_data/Unite_extract_ITS1.fasta