Mercurial > repos > frogs > frogs_3_1_0

comparison test-data/references/normalisation.log @ 0:59bc96331073 draft default tip

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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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-1:000000000000 0:59bc96331073
1 ## Application
2 Software: normalisation.py (version: 3.1)
3 Command: ./../app/normalisation.py -n 100 -f res/04-filters.fasta -i res/06-affiliation.biom -s res/normalisation_report.html -l res/normalisation.log
4
5 Application start: 13 Feb 2019 11:24:00
6
7 #Normalisation calculation
8 start: 13 Feb 2019 11:24:00
9 ########################################################################################################
10 # Random sampling in each sample. (biomTools.py version : 0.10.1)
11 Command:
12 biomTools.py sampling --nb-sampled 100 --input-file res/06-affiliation.biom --output-file abundance.biom
13
14 Execution:
15 start: 13 Feb 2019 11:24:00
16 end: 13 Feb 2019 11:24:00
17
18 end: 13 Feb 2019 11:24:00
19
20 ########################################################################################################
21 # Update fasta file based on sequence in biom file (biomFastaUpdate.py version : 1.0.1)
22 Command:
23 biomFastaUpdate.py --input-biom abundance.biom --input-fasta res/04-filters.fasta --output-file sequence.fasta --log 1550053440.26_4588_tmp_fasta_update.log
24
25 Execution:
26 start: 13 Feb 2019 11:24:00
27 end: 13 Feb 2019 11:24:00
28
29
30 #Summarise
31 start: 13 Feb 2019 11:24:00
32 end: 13 Feb 2019 11:24:00
33
34 Application end: 13 Feb 2019 11:24:00