Mercurial > repos > frogs > frogs_3_1_0
comparison tool-data/phiX_db.loc.sample @ 0:59bc96331073 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
| author | frogs |
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| date | Thu, 28 Feb 2019 10:14:49 -0500 |
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| -1:000000000000 | 0:59bc96331073 |
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| 1 # Copyright (C) 2014 INRA | |
| 2 # | |
| 3 # This program is free software: you can redistribute it and/or modify | |
| 4 # it under the terms of the GNU General Public License as published by | |
| 5 # the Free Software Foundation, either version 3 of the License, or | |
| 6 # (at your option) any later version. | |
| 7 # | |
| 8 # This program is distributed in the hope that it will be useful, | |
| 9 # but WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 10 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
| 11 # GNU General Public License for more details. | |
| 12 # | |
| 13 # You should have received a copy of the GNU General Public License | |
| 14 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 15 # | |
| 16 # | |
| 17 #This is a sample file that enables tools FROGS_filters to identify phix contaminant. You will #need to create or download Blast+ index. | |
| 18 #download link : http://genoweb.toulouse.inra.fr/frogs_databanks/contaminants | |
| 19 #Finally you will need to create phiX_db.loc file similar to this one.The phiX_db.loc file has this format (longer white space characters are | |
| 20 #TAB characters): | |
| 21 # | |
| 22 #<unique_database_name> <printed_database_name> <file_path> | |
| 23 # | |
| 24 #Second column will be the visible name in galaxy. | |
| 25 #So, for example, if you had phix Blast+ indexed stored in | |
| 26 #/galaxy_databanks/phiX/ | |
| 27 #then the phiX_db.loc entry would look like this: | |
| 28 # | |
| 29 #phiX phiX /galaxy_databanks/phiX/phi.fa | |
| 30 # | |
| 31 #and your /galaxy_databanks/phiX/ directory | |
| 32 #would contain index files: | |
| 33 # | |
| 34 #-rwxrwxr-x 1 gpascal FROGS 5535 16 sept. 2015 phi.fa | |
| 35 #-rw-rwxr-- 1 gpascal FROGS 132 16 sept. 2015 phi.fa.nhr | |
| 36 #-rw-rwxr-- 1 gpascal FROGS 88 16 sept. 2015 phi.fa.nin | |
| 37 #-rw-rwxr-- 1 gpascal FROGS 1348 16 sept. 2015 phi.fa.nsq | |
| 38 # | |
| 39 #<value> <name> <file_path> | |
| 40 # | |
| 41 #phiX phiX <FROGS-wrappers>/test-data/databases/phiX_db_data/phi.fa |